Pairwise Alignments

Query, 240 a.a., RNA polymerase sigma factor FliA from Dickeya dianthicola ME23

Subject, 247 a.a., flagellar biosynthesis sigma factor FliA from Marinobacter adhaerens HP15

 Score =  228 bits (580), Expect = 1e-64
 Identities = 125/234 (53%), Positives = 158/234 (67%), Gaps = 5/234 (2%)

Query: 4   LYTAEGTMDKNSLWKRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLSAVERYDSLQ 63
           +Y          L +++ PLV+  AL L  RLPASV+L+DL+QAG IGLL A +RY S +
Sbjct: 9   IYNQSSAQKPAQLIEQHAPLVKKIALHLMARLPASVQLEDLMQAGMIGLLEAAQRYSSTK 68

Query: 64  GTAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREVAQAMQQAEQSLGRAPTEQEVAQT 123
           G  F TYA  RIRGAM+DE+R  DW PRSV RNAR ++QA++  E  LGR   +QEVA+ 
Sbjct: 69  GATFETYAGIRIRGAMVDEIRKGDWVPRSVHRNARRISQAIKAVEDRLGREAHDQEVAEE 128

Query: 124 LNISLEEYRQILLDTNNSQLFSYDEWREEHGDSAEALLEGNE-EANPLNQLMDVNLRQRV 182
           L + L EY   L D+N+ +LFS DE  E    S E  +E  E + NPL  L     R+ +
Sbjct: 129 LGMGLPEYHSYLSDSNSGRLFSLDELNE----SGELPIEQTETQDNPLEGLSSDAFRRSL 184

Query: 183 MDAIDNLPEREKMVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRAKL 236
            +AI++LPEREK+VL+LYYQEELNLKEIGAVL V ESRVSQ+HSQA  RLR +L
Sbjct: 185 AEAIEDLPEREKLVLSLYYQEELNLKEIGAVLGVSESRVSQIHSQAALRLRGRL 238