Pairwise Alignments

Query, 240 a.a., RNA polymerase sigma factor FliA from Dickeya dianthicola ME23

Subject, 265 a.a., RNA polymerase sigma factor for flagellar operon FliA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  164 bits (414), Expect = 2e-45
 Identities = 90/222 (40%), Positives = 132/222 (59%), Gaps = 4/222 (1%)

Query: 12  DKNSLWKRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLSAVERYDSLQGTAFTTYA 71
           +K ++ + Y P +R  ALRL+ +LP +VEL +L+ AG +GL+ A+ ++    G  F TYA
Sbjct: 35  EKEAIVRHYAPKIRFLALRLKAKLPRNVELGELISAGTLGLMEALGKFKPQLGIRFETYA 94

Query: 72  VQRIRGAMLDELRSRDWAPRSVRRNAREVAQAMQQAEQSLGRAPTEQEVAQTLNISLEEY 131
             RIRGAMLDELR  DW PRS+R+  R++ +AMQ+ E   GR  TE+++ +   +  ++ 
Sbjct: 95  ESRIRGAMLDELRRLDWFPRSLRQRVRQLDEAMQRIEHETGRRATEEDLQKATGLDEKDV 154

Query: 132 RQILLDTNNSQLFSYDEWREEHGDSAEALLEGNEEANPLNQLMDVNLRQRVMDAIDNLPE 191
           R  L    N    S +  +    DS         +A+P+       L +RV   ID L  
Sbjct: 155 RLGLEALQNQLCLSLEAMQ----DSLAGEGGPQSDADPMQTAATQELIERVASLIDELTP 210

Query: 192 REKMVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233
           REK+VL+LYY +ELN++E   V+ + E RVSQLHSQA+ RLR
Sbjct: 211 REKLVLSLYYSDELNMRETAEVMGITEGRVSQLHSQALGRLR 252