Pairwise Alignments

Query, 318 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Dickeya dianthicola ME23

Subject, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

 Score =  106 bits (265), Expect = 6e-28
 Identities = 84/312 (26%), Positives = 156/312 (50%), Gaps = 32/312 (10%)

Query: 11  LTVSAEEAGQRIDNFLRTRLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLLDGDELRIPP 70
           LTV ++ AG ++ + L+   + +   MI +  ++ ++ VN K I  + KL          
Sbjct: 10  LTVDSKIAGNKLIDVLKDNFE-LSNKMIKKFDKENKIFVNSKNISLKSKL---------- 58

Query: 71  VRQSEREESAVSASLDKVSA--LADCILYEDDYLLLLNKPSGTAVHGG----SGLSFGVI 124
            +++E     +   ++ ++   L   ++YEDD LL+++K     VH      SG     I
Sbjct: 59  -KENETVSVEIDYGINNITPENLTLNVIYEDDDLLIVDKSKNMVVHPTKNVLSGTLANAI 117

Query: 125 EALRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRSKGMQKDYLALVRGQW 184
              + +  +   +  V+RLD DT+G+L+VAK   + + L +Q+    ++K Y+A+V G  
Sbjct: 118 SNHQKINNQNYKIRFVNRLDMDTTGLLIVAKNSYSHQQLAKQMDEGILEKIYIAVVNGHL 177

Query: 185 QSHCKAVQAPLLKNVLQSGERIVR--VNNEGKPSETLFKVEERFDCATLVRASPVTGRTH 242
                 ++  ++++ +   E  ++  ++N GK S+T +KV E    A+++  + +TGRTH
Sbjct: 178 D-----LKEGIIEDSIDLNENGIKRELSNFGKISKTKYKVIEELKNASVLEINLLTGRTH 232

Query: 243 QIRVHAQYAGHPIAFDDRYGDREFDAQLAGTGLKRLFLHAQALRFEHPHTGETLRIEAPL 302
           QIRVH    G+ I  D  YG+           + R  LH+  LRF HP T E + I + L
Sbjct: 233 QIRVHLSSTGNYIIGDTLYGE-------TSKLIDRQALHSHILRFIHPITKEKIEIISKL 285

Query: 303 DAALRYCLQTLR 314
              ++  ++ L+
Sbjct: 286 PDDMKNLIKNLK 297