Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Dickeya dianthicola ME23

Subject, 1148 a.a., transcription-repair coupling factor (mfd) from Pseudomonas stutzeri RCH2

 Score = 1261 bits (3264), Expect = 0.0
 Identities = 637/1136 (56%), Positives = 836/1136 (73%), Gaps = 3/1136 (0%)

Query: 9    LPGKAGEQRLLGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEIQQFT-AQPV 67
            LP  +G+Q   G L GAA ++  AE         +L+T D Q+A RL++E+  F    PV
Sbjct: 9    LPAASGKQHW-GNLPGAALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAFFAPGLPV 67

Query: 68   MTLPDWETLPYDSFSPHQEIISARLSTLYQLPSLTRGVLILPVNTLMQKVCPHAFLHGHA 127
            +  PDWETLPYD FSPHQ+I+S R+S LYQLP L+ GVL++P+ T + ++ P  FL G +
Sbjct: 68   LHFPDWETLPYDIFSPHQDIVSQRISALYQLPELSHGVLVVPITTALHRLAPKRFLLGSS 127

Query: 128  LMLKKGQRLSRDRLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEEPFRIDFFDD 187
            L+L  GQ+L  +++R +LE AGYR VD V EHGEFA RGAL+DLFPMGS  P+RID FDD
Sbjct: 128  LVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPLPYRIDLFDD 187

Query: 188  EIDSLRLFDADTQRTLNEVEQIHLLPAREFPTDKTAIELFRSQWREQFEVRRDAEHVYQQ 247
            EI++LR FD + QR++++VE I LLPAREFP  K A+  FR+++RE+F+V      +YQ 
Sbjct: 188  EIETLRTFDPENQRSIDKVESIRLLPAREFPLKKEAVTGFRARFRERFDVDFRRCPIYQD 247

Query: 248  VSKGTLPAGIEYWQSLFFNQPLPALFSYLPTGTLLVNTGDIQQGADRFWQDIQQRHDSRR 307
            +S G  PAGIEY+  LF+ +    LF YLP  + + +   I+Q A++FW D++ R++ RR
Sbjct: 248  LSTGITPAGIEYYLPLFYEETA-TLFDYLPEDSQVFSLPGIEQAAEQFWSDVRNRYEERR 306

Query: 308  VDPMRPLLPPNALWLPVDTLFAELKQWPRVQLRSDTLPDKAANINLGYQPLPDLAVQHQN 367
            VDP RPLLPP  L++PV+  FA LK WPRV      +           Q LP+LA++ + 
Sbjct: 307  VDPERPLLPPAELFMPVEDCFARLKLWPRVVASQQDVESGIGRERFNAQALPELAIESKA 366

Query: 368  KSPLDALRRFVEQFGGQIVFSVESEGRRETLQEVLSRIKLSPAPVKSLEQTASPGCYLMI 427
              PL  LR+F+E + G+++F+ ES GRRE L E+L+R+KL P  V       +    L I
Sbjct: 367  SEPLGKLRQFLESYPGRVLFTAESAGRREVLLELLARLKLRPQEVDGWTDFLASDQRLAI 426

Query: 428  GASEHGFIDTLRQRTLICESDLLGERVSRRRQDSRRTINTDTLIRNLAELRPGQPVVHLE 487
              +       L    L+ ES L G+RV +RR+  +     + +I+NL ELR G PVVH++
Sbjct: 427  TIAPLDEGLQLDDVALVAESPLFGQRVMQRRRREKSRDGGENVIKNLTELREGSPVVHID 486

Query: 488  HGVGRYAGLTTLEAGGIKAEYLILHYAGEDKLYVPVSSLHLISRYAGGAEESAPLHKLGG 547
            HGVGRY GLTTLE  G   E+L+L YA E KLYVPV+SLHLI+RY G  +  APLH+LG 
Sbjct: 487  HGVGRYQGLTTLEIEGQAQEFLLLQYAEEAKLYVPVASLHLIARYTGSDDALAPLHRLGS 546

Query: 548  DAWVRARQKAAEKVRDVAAELLDVYAQRAAHTGFAFKHDREQYQLFCQGFPFDTTPDQAQ 607
            + W +A++KAAE+VRDVAAELLD+YA+RAA  G+AFK  +  Y+ F  GFPF+ TPDQ  
Sbjct: 547  ETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPQVDYETFAAGFPFEETPDQQA 606

Query: 608  AINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFD 667
            AI+AV  D+     MDRLVCGDVGFGKTEVAMRAAF+AV   +QV VLVPTTLLAQQH++
Sbjct: 607  AIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVGVLVPTTLLAQQHYN 666

Query: 668  NFRDRFANWPVRIEMLSRFRSQKEQTQVLEQTQEGKVDILIGTHKLLQSDVYWLDLGLLI 727
            +FRDRFA+WPVR+E++SRF+S KE    + +  EGK+DILIGTHKLLQ DV + +LGL+I
Sbjct: 667  SFRDRFADWPVRVEVMSRFKSAKEVQNAIAELAEGKIDILIGTHKLLQDDVKFSNLGLVI 726

Query: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLAVK 787
            +DEEHRFGVR KE++KA+R+ VDILTLTATPIPRTLNM+++G+RDLSIIATPPARRL+V+
Sbjct: 727  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSIIATPPARRLSVR 786

Query: 788  TFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKAAQQLNELVPEARIAIGHGQMRE 847
            TFV E  + V++EA+LRE+LRGGQVYYL+NDV+ IEK A  L  LVPEAR+AIGHGQMRE
Sbjct: 787  TFVMEQQNTVIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQALVPEARVAIGHGQMRE 846

Query: 848  RDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSH 907
            RDLE+VM+DF+H+RFNVLV +TIIETGID+PSANTIIIERAD FGLAQLHQLRGRVGRSH
Sbjct: 847  RDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSH 906

Query: 908  HQAYAYLLTPNPKAMSNDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEGQSGQM 967
            HQAYAYLLTP  KAM++DA KRLEAIA+ +DLGAGF LATHDLEIRGAGELLGEGQSGQ+
Sbjct: 907  HQAYAYLLTPTRKAMTDDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGELLGEGQSGQI 966

Query: 968  ESVGFSLYMDLLESAVESLKAGREPSLEDLISGQTDVELRLPALLPDDFIPDVNTRLSFY 1027
            ++VGF+LYM++LE AV++++ G +P+LE  + G  ++ LRLPAL+P+D++PDV+ RL  Y
Sbjct: 967  QAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEINLRLPALIPEDYLPDVHARLILY 1026

Query: 1028 KRIASAKNDNELDDLKAELIDRFGKLPDAARHLLQVAGLRQQAQTLGIKRIEGNDKGGFV 1087
            KRIA+A +++ L +L+ E+IDRFG LP+  ++L+++  L+ QA+ LGI +I+   +GG +
Sbjct: 1027 KRIANAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKLGITKIDAGPQGGRI 1086

Query: 1088 EFSQHNRVDPTHLIGLLQRDPKIYRLDGPSRLKFIKDLGGYPQRLTFITTLLEEMA 1143
            EFS    VDP  LI L+Q  PK Y+ +G +  KF   +    +R   +  LLE +A
Sbjct: 1087 EFSADTSVDPMVLIKLIQSQPKRYKFEGATLFKFQVPMERPEERFNTLEALLERLA 1142