Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Dickeya dianthicola ME23

Subject, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

 Score = 1453 bits (3762), Expect = 0.0
 Identities = 728/1141 (63%), Positives = 901/1141 (78%), Gaps = 5/1141 (0%)

Query: 13   AGEQRLLGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEIQQFTAQPVMTLPD 72
            AG+++ +G L GA+ A+  AE+   H    +L  PD Q AL+L  E++QF+   V   PD
Sbjct: 15   AGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVALFPD 74

Query: 73   WETLPYDSFSPHQEIISARLSTLYQLPSLTRGVLILPVNTLMQKVCPHAFLHGHALMLKK 132
            WETLPYD+FSPHQ+IIS R+S LYQLPSLTRG+ I+PV+TL+Q+  P  FL  H L++K+
Sbjct: 75   WETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLIVKR 134

Query: 133  GQRLSRDRLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEEPFRIDFFDDEIDSL 192
            G   S D+LR QLE + YR VDQV   GE+A+RG++LDLFPMGS +PFRIDFFDDEID++
Sbjct: 135  GDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTI 194

Query: 193  RLFDADTQRTLNEVEQIHLLPAREFPTDKTAIELFRSQWREQFEVRRDAEHVYQQVSKGT 252
            R FD D QR++ E+++I LLPA EFPT   AIE FR++WR++FE RR+ E VY QVSKGT
Sbjct: 195  RTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGT 254

Query: 253  LPAGIEYWQSLFFNQPLPALFSYLPTGTLLVNTGDIQQGADRFWQDIQQRHDSRRVDPMR 312
             PAGIEYWQ LFF      LF YLP  + L+  G++++  D+F  D+  R+D R +DP+R
Sbjct: 255  WPAGIEYWQPLFFEHS-ETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNIDPLR 313

Query: 313  PLLPPNALWLPVDTLFAELKQWPRVQLRSDTLPDKAANINLGYQPLPDLAVQHQNKSPLD 372
            PLLPPN LWL  D LFA  K  P+VQL S  +  +A  +N   QPLP LAV+HQNK PL 
Sbjct: 314  PLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLA 373

Query: 373  ALRRFVEQFGGQIVFSVESEGRRETLQEVLSRIKLSPAPVK--SLEQTASPGCYLMIGAS 430
            ALR+F EQF G+I+FSVESEGRRE L E+L RIKL P      SL    +    L++G++
Sbjct: 374  ALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSLVLGSA 433

Query: 431  EHGFIDTLRQRTLICESDLLGERV--SRRRQDSRRTINTDTLIRNLAELRPGQPVVHLEH 488
            E GFI    Q  LICESDLLG+RV   RR++D +   N+D +IRNLAEL+PGQPVVH++H
Sbjct: 434  ERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVHIDH 493

Query: 489  GVGRYAGLTTLEAGGIKAEYLILHYAGEDKLYVPVSSLHLISRYAGGAEESAPLHKLGGD 548
            G+GRY GL TLEAGG+ +EY++L Y  E KLYVPVSSL+LISRY+GGAEE+A LHKLGG+
Sbjct: 494  GIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGGE 553

Query: 549  AWVRARQKAAEKVRDVAAELLDVYAQRAAHTGFAFKHDREQYQLFCQGFPFDTTPDQAQA 608
            AWV+AR+KAAEKVRDVAAELLDVYA+R    GF F  DREQY  F   FPF+ T DQA A
Sbjct: 554  AWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMA 613

Query: 609  INAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFDN 668
            INAVLSDMC+  AMDRLVCGDVGFGKTEVAMRAAF+A +N KQVAVLVPTTLLAQQHF+N
Sbjct: 614  INAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFEN 673

Query: 669  FRDRFANWPVRIEMLSRFRSQKEQTQVLEQTQEGKVDILIGTHKLLQSDVYWLDLGLLIV 728
            FRDRFAN P+R+E+LSRF+S KEQ Q+L+   +GKVDIL+GTHKLL S++ + DLGLLIV
Sbjct: 674  FRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIV 733

Query: 729  DEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLAVKT 788
            DEEHRFGVR KE++KAMRA+VDILTLTATPIPRTLNMAMSG+RDLSIIATPPARRLA+KT
Sbjct: 734  DEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKT 793

Query: 789  FVREYDSLVVREAILREILRGGQVYYLYNDVENIEKAAQQLNELVPEARIAIGHGQMRER 848
            FVR+ +  V+REA+LREI+RGGQVY+L+N VE I+K A  L +LVPEARI + HGQMRER
Sbjct: 794  FVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRER 853

Query: 849  DLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHH 908
            +LE+VMNDF+HQRFN+LVCTTIIETGID+P+ANTII++RAD  GLAQLHQLRGRVGRSHH
Sbjct: 854  ELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHH 913

Query: 909  QAYAYLLTPNPKAMSNDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEGQSGQME 968
            QAYAYLLTP PKA++ DA KRLEAIASLEDLGAGF LATHDLEIRGAGELLGE QSGQ++
Sbjct: 914  QAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQ 973

Query: 969  SVGFSLYMDLLESAVESLKAGREPSLEDLISGQTDVELRLPALLPDDFIPDVNTRLSFYK 1028
            SVGF+LYM++LE AVE+LK+G+EP+L+DL+  QT+VE+RLPALLP+++IPD+NTRLS YK
Sbjct: 974  SVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDINTRLSMYK 1033

Query: 1029 RIASAKNDNELDDLKAELIDRFGKLPDAARHLLQVAGLRQQAQTLGIKRIEGNDKGGFVE 1088
            +IAS  + +EL +LK ELIDRFGKLPDAA +LL +A L+  A  L +++IE +++GG+VE
Sbjct: 1034 QIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVE 1093

Query: 1089 FSQHNRVDPTHLIGLLQRDPKIYRLDGPSRLKFIKDLGGYPQRLTFITTLLEEMAQHTCA 1148
            F  +  ++P  L+ LLQ  PK+  +DGP++LKF   L     R+ F+  +L+   Q+   
Sbjct: 1094 FYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLKNFQQNVLP 1153

Query: 1149 A 1149
            A
Sbjct: 1154 A 1154