Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Dickeya dianthicola ME23

Subject, 1177 a.a., Transcription-repair coupling factor (NCBI) from Rhodospirillum rubrum S1H

 Score =  735 bits (1898), Expect = 0.0
 Identities = 445/1142 (38%), Positives = 653/1142 (57%), Gaps = 54/1142 (4%)

Query: 42   VVLITPDMQNALRLRDEIQQF-TAQPVMTLPDWETLPYDSFSPHQEIISARLSTLYQL-- 98
            V+ +  D     RL + I  F  A  ++  P W+ +PYD  SP+ EI++ RL TL +L  
Sbjct: 40   VLHVARDDVRLARLAETIAFFHPAVEILEFPAWDCVPYDRVSPNVEIVARRLETLSRLSE 99

Query: 99   -PSLTRG--VLILPVNTLMQKVCPHAFLHGHALMLKKGQRLSRDRLRNQLEQAGYRSVDQ 155
             P+   G  +++   + ++Q+V P   L       + G RL   +L + L + GY   +Q
Sbjct: 100  EPTRQPGGRLVLTTASAILQRVPPRQILERGVFSARVGGRLDLGKLLDHLARHGYGRSEQ 159

Query: 156  VMEHGEFATRGALLDLFPMGSEEPFRIDFFDDEIDSLRLFDADTQRTLNEVEQIHLLPAR 215
            VME GE+A RG ++D+FP G+ EP R+D F DE+DSLR FD  +QRT  + + + L P  
Sbjct: 160  VMEPGEYAVRGGIVDIFPPGAPEPLRLDLFGDELDSLRSFDPVSQRTTGQRDALILRPMS 219

Query: 216  EFPTDKTAIELFRSQWREQFEVRRDAEHVYQQVSKGTLPAGIEYWQSLFFNQPLPALFSY 275
            E   DK +I  FRS +RE F     A+ +Y+ +S G    G+E+W  LF ++ +  LF+Y
Sbjct: 220  EVVLDKESISRFRSGYRELFGTPSAADALYEAISAGLPFMGMEHWLPLF-HEGMDTLFAY 278

Query: 276  LPTGTLLVNTGDIQQGADRFWQD-IQQRHDSRRV----------------DPMRPLLPPN 318
            +P G + ++ G    GA R  QD I +  ++RR+                  +   LPP 
Sbjct: 279  VPDGPVTLDPG--LDGALRSRQDQIFEYFEARRLMESVGDGAKASEKPGGGMIYHALPPP 336

Query: 319  ALWLPVDTLFAELKQWPRVQLRSDTLPDKAANINL--------GYQPLPDLAVQHQNKSP 370
             ++L  D         P     +   PD A    +        G++   D+  +    + 
Sbjct: 337  RMFLEEDEFLRHCAGRPGAAFSAYAAPDVATEKGVVGDFLGRPGHE-FADIRAR-AGGNV 394

Query: 371  LDALRRFVEQF---GGQIVFSVESEGRRETLQEVLSRIKLSPAPV-----KSLEQTASPG 422
             DALR   +     G ++V +  + G RE +  VL    LSP        ++LE+     
Sbjct: 395  FDALRDHAQALRAAGKRVVLTAATMGARERMTGVLREHGLSPIVTAETWAEALERAKKAT 454

Query: 423  CYLMIGASEHGFIDTLRQRTLICESDLLGERVSRRRQDSRRTINTDTLIRNLAELRPGQP 482
              L +   + GF        +I E+D+LG+R+SR     R+    D  I +++ L  G  
Sbjct: 455  VVLTL-ILDRGF--ETPDLAVISEADVLGDRLSR---PVRKKKLGDKFIPDISALSEGDL 508

Query: 483  VVHLEHGVGRYAGLTTLEAGGIKAEYLILHYAGEDKLYVPVSSLHLISRYAGGAEESAPL 542
            VVH++HG+G+Y GL TL AGG   + L + YA  ++LYVPV ++ ++SRY G  +    L
Sbjct: 509  VVHVDHGIGQYEGLETLTAGGAPHDCLRVVYADNNRLYVPVENIEVLSRY-GSEQAGVQL 567

Query: 543  HKLGGDAWVRARQKAAEKVRDVAAELLDVYAQRAAHTGFAFKHDREQYQLFCQGFPFDTT 602
             KLGG AW   + K  +++RD+A +L+ V A R    G         Y  F   FP+  T
Sbjct: 568  DKLGGVAWQARKAKLKQRIRDMAEQLIGVAAARQLKVGEVISPPEGLYDEFAARFPYAET 627

Query: 603  PDQAQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLA 662
             DQ +AI   L D+     MDRL+CGDVGFGKTEVA+RAAF    + +QVAV+VPTTLLA
Sbjct: 628  DDQLRAIADTLDDLAAGRPMDRLICGDVGFGKTEVALRAAFATAMSGRQVAVVVPTTLLA 687

Query: 663  QQHFDNFRDRFANWPVRIEMLSRFRSQKEQTQVLEQTQEGKVDILIGTHKLLQSDVYWLD 722
            +QH   F++RFA  PVRI  LSR  + ++   V E+   G +DI++GTH LL   V + D
Sbjct: 688  RQHHLTFKERFAGLPVRIGQLSRLVTARDTKAVKEEMAAGTLDIVVGTHALLAKTVRFRD 747

Query: 723  LGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGIRDLSIIATPPAR 782
            LGLLIVDEE  FGV HKER+K MRA+V +LTLTATPIPRTL +A++G+R++SIIATPP  
Sbjct: 748  LGLLIVDEEQHFGVAHKERLKQMRADVHVLTLTATPIPRTLQLALTGVREMSIIATPPVD 807

Query: 783  RLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKAAQQLNELVPEARIAIGH 842
            RLAV+TFV  +D +VVREAILRE  RGGQ +Y+   + +I+K  ++L  LVP+ R  + H
Sbjct: 808  RLAVRTFVLPFDPVVVREAILRERFRGGQCFYVCPRLTDIDKVMERLTTLVPDIRAVVAH 867

Query: 843  GQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGR 902
            GQM    LE VM  F   +++VLV T I+E+G+DIP ANTIII RAD FGLAQL+QLRGR
Sbjct: 868  GQMAPSRLEEVMTAFADGQYDVLVATNIVESGLDIPRANTIIIHRADMFGLAQLYQLRGR 927

Query: 903  VGRSHHQAYAYLLTPNPKAMSNDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEG 962
            VGR+  + YAYL  P  + +S  A KRL+ + +L+ LGAGF LA+HDL+IRGAG LLG+ 
Sbjct: 928  VGRARARGYAYLTLPPGRTVSKTAAKRLDVMQTLDTLGAGFTLASHDLDIRGAGNLLGDE 987

Query: 963  QSGQMESVGFSLYMDLLESAVESLKAGREPSLEDLISG-QTDVELRLPALLPDDFIPDVN 1021
            QSG ++ VG  LY  LLE AV + + G  P +E+        ++L  P L+PD ++ D+ 
Sbjct: 988  QSGHIKEVGIELYQQLLEEAVAAAREG--PGVEEASGAWSPQIQLGTPILIPDSYVKDLG 1045

Query: 1022 TRLSFYKRIASAKNDNELDDLKAELIDRFGKLPDAARHLLQVAGLRQQAQTLGIKRIEGN 1081
             RL  Y+RIA   ++ E+D++ AE++DRFG LPD   +LL+V  ++   +    ++++  
Sbjct: 1046 LRLGLYRRIAGVTDEAEIDEMAAEMVDRFGPLPDEVENLLKVVTIKVLCRRANAEKVDAG 1105

Query: 1082 DKGGFVEFSQHNRVDPTHLIGLLQRDPKIYRLDGPSRLKFIKDLGGYPQRLTFITTLLEE 1141
             KG  + F  +   +P  L+  + ++    +L    +L + +D     +R+  +  L+  
Sbjct: 1106 PKGAVLSFRDNLFPNPGGLVRFIGQNVATVKLRPDHKLVYRRDWEVARERIQGLGKLMRT 1165

Query: 1142 MA 1143
            +A
Sbjct: 1166 LA 1167