Pairwise Alignments

Query, 458 a.a., ATP-binding protein from Dickeya dianthicola ME23

Subject, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

 Score = 80.9 bits (198), Expect = 1e-19
 Identities = 63/207 (30%), Positives = 101/207 (48%), Gaps = 15/207 (7%)

Query: 230 EWRLDQK-------VKPGYRALFFGPPGTGKTLTAALLAKVTDRDVYRVDVSMVVSKYIG 282
           EW +  K       ++P    L FGPPGTGKTL A  +A  ++ +   V    + SK++G
Sbjct: 524 EWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVANESEANFISVKGPEIFSKWVG 583

Query: 283 ETEKNLSRLF-DAASYKDWILFFDEADALFGKRTVTQSSN---DRHANQLTGYLLQRIED 338
           E+EK +  +F  A      ++FFDE D++  KR +   S+   ++  NQL   L    E 
Sbjct: 584 ESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSSGVTEKVVNQLLTELDGLEEP 643

Query: 339 FPGTVILATNLKANMDDAFTR--RFQNMVEFALPGPQERLQLWQNAFREVCELGDDIELS 396
               +I ATN    +D A  R  R   +V   +P    RL++++    +   +G D+ L 
Sbjct: 644 KDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETARLEIFK-VHTKGMPIGKDVNLE 702

Query: 397 RIA-EDFALSGGQIVNVLRQCALQAIR 422
           ++A E    +G  I  V R+ A+ A+R
Sbjct: 703 KLAKETKGYTGADIEAVCREAAMIALR 729



 Score = 71.2 bits (173), Expect = 1e-16
 Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 4/148 (2%)

Query: 237 VKPGYRALFFGPPGTGKTLTAALLAKVTDRDVYRVDVSMVVSKYIGETEKNLSRLFDAAS 296
           ++P    L  GPPGTGKTL A  +A     + Y ++   ++SKY+GETE+NL ++F+ A 
Sbjct: 208 IEPPKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAE 267

Query: 297 YKD-WILFFDEADALFGKRTVTQSSNDRHANQLTGYLLQRIEDFPGTVIL-ATNLKANMD 354
                I+F DE DA+  KR       +R        L+  +E     VIL ATN   ++D
Sbjct: 268 ENSPSIIFIDEIDAVAPKRDEASGEVERRMVAQLLTLMDGLESRGQLVILAATNRPDSID 327

Query: 355 DAFTR--RFQNMVEFALPGPQERLQLWQ 380
            A  R  R    +   +P    R ++ Q
Sbjct: 328 MALRRPGRLDREITIGIPDRHGRNEILQ 355