Pairwise Alignments

Query, 220 a.a., ABC transporter permease from Dickeya dianthicola ME23

Subject, 275 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Shewanella loihica PV-4

 Score = 53.5 bits (127), Expect = 4e-12
 Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 4/164 (2%)

Query: 57  VLVNIIRSIPFVILLVLLLPLTQFLLGNTIGPVAAVVPMSVAAIAFYARLVDSALRDVEP 116
           V+  +I  +  ++L V +  L  +      G +   +  S    A+ A +V S LR+++ 
Sbjct: 110 VMPEVITGLSLLLLFVHMADLLGWPAER--GMLTVWIAHSTFCAAYVAVVVSSRLRELDM 167

Query: 117 GIVEAAEAFGASPLRIICTVLLPEARAGLLRGLTITLVSLIGYSAMAGIVGGGGVGDL-A 175
            I EAA+  GA+PL+    + +P     L+ G  ++    +    +A    G G   L  
Sbjct: 168 SIEEAAQDLGATPLKTFFHITVPMISPALIAGWLLSFSLSLDDLVIASFASGPGATTLPM 227

Query: 176 IRFGYYRYETQVMVMTVIALVIL-VQIVQTLGDWLAKRADKRER 218
           + F   R      +  +  L+IL V ++  +  +LA+RADKR R
Sbjct: 228 VVFSSVRMGVSPKINALATLIILIVSLIAFISWYLARRADKRSR 271