Pairwise Alignments

Query, 601 a.a., DEAD/DEAH box helicase from Dickeya dianthicola ME23

Subject, 464 a.a., DNA or RNA helicases of superfamily II from Pseudomonas stutzeri RCH2

 Score = 66.6 bits (161), Expect = 2e-15
 Identities = 96/381 (25%), Positives = 162/381 (42%), Gaps = 34/381 (8%)

Query: 1   MSFTLRPYQQEAVDATLAYFRQHTAPAVIVLPTGAGKSLVIAELAR--LARGR---VLVL 55
           M+ +LR +Q+  ++  L +F   T+        GAGK+ + AELAR  L +GR   VL  
Sbjct: 1   MTSSLRDWQRRCINTALEHFLS-TSHFFCQATPGAGKTRMAAELARNLLDQGRIDLVLCF 59

Query: 56  AHVRELVEQNHAKYCA-LGLQADIFAAGLNQHDSEGKVVFGSVQSVARHPDKF----DDA 110
           A   ++VE   + + A LG + D       Q  + G     + Q++    + F    DD 
Sbjct: 60  APSCQVVEGFRSTFMAVLGRRLD------GQLGAVGAAY--TYQAMDYREEAFWQLLDDY 111

Query: 111 FSLLIVDECHRISDDE----NSQYQQIIQQAQQANPQLRLLGLTATPYRLGRGWIYQYHY 166
              ++ DE H  +  +    N+  QQI+Q+ Q        L L+ TP+R     I    Y
Sbjct: 112 RVFVVFDEIHHCAGHDPLLSNAWGQQILQRVQDR--AACTLALSGTPWRSDDRAIALARY 169

Query: 167 HGMIRGDDGCLFRDCIYELPLRYMIRHGFLVPPERLDMPVVQYDFSQLAARSDGLFNNGL 226
                G   C FR  + E     + R   +V  +   + + +   ++   R        L
Sbjct: 170 SSP-EGQLICDFRYGLKEAIADGVCRSPRIVLLDNQQVKLTEELQAESTVRLFPSIAKLL 228

Query: 227 FNNGLFNNGRFSDVELNRELKRQQRVTPHIVRQITEYAANRRGVMIFAATVEHAREVAGL 286
             + +         E+  +L    R    ++RQI   AA     ++ +  +EHAR++A  
Sbjct: 229 GESPVTYEELLRHDEVIDQLLILGRAKLDVLRQIKPDAAG----LVVSTDIEHARQIAQA 284

Query: 287 LPA--SEAALISGETPAPQRDALIAAFKQQQLRYLVNVSVLTTGFDAPHVDVIAILRPTE 344
           L A      +++  TP  Q+  LI  F+    R++V V +++ G D P + V   L    
Sbjct: 285 LEAMGESCQIVTNRTPDAQQ--LINTFRHSDCRWIVAVGMISEGTDIPRLQVCCYLSRIR 342

Query: 345 SVSLYQQIIGRGLRLFPGKSD 365
           +   Y+Q++GR LR   G  D
Sbjct: 343 TELHYRQVLGRVLRRKDGSDD 363