Pairwise Alignments

Query, 601 a.a., DEAD/DEAH box helicase from Dickeya dianthicola ME23

Subject, 1188 a.a., type I restriction-modification system, R subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 67.8 bits (164), Expect = 3e-15
 Identities = 105/429 (24%), Positives = 179/429 (41%), Gaps = 78/429 (18%)

Query: 5   LRPYQQEAVDATLAYFRQHTAPAVIVLPTGAGKS-LVIAELARLARG----RVLVLAHVR 59
           LR YQQ+A+ A  +   Q     ++ + TG GK+  +I  + R  +     R+L L    
Sbjct: 459 LRDYQQKAIAAVESALAQDNTQCLLAMATGTGKTRTIIGLMYRFLKAERFRRILFLVDRT 518

Query: 60  ELVEQNHAKYCALGLQAD--------IFAAGLNQHDSEGKVVFGSVQSVARHPDKFD--- 108
            L EQ    +    L+ +        I   G  + ++E ++   +VQ++ +     D   
Sbjct: 519 ALGEQACDSFDEAKLEQNKVLSSIYNIAELGDMKSEAETRIQVATVQAMVKRIFMSDNPP 578

Query: 109 --DAFSLLIVDECHR------------ISDDENSQYQQIIQQAQQANPQLRLLGLTATPY 154
             D F  +IVDE HR            ++  + SQY    ++       +R+ GLTATP 
Sbjct: 579 PLDEFDCIIVDEAHRGYALDQQMTEGELATRDASQYLSSYRRVLDYFDAVRI-GLTATPA 637

Query: 155 R-----LGRGWIYQYHYHGMIRGDDGCLFRDCIYELPLRY---MIRHGFLVPP-ERLDMP 205
           +      G+  +Y Y Y   + GD      D  +E P+RY   + +HG      E +   
Sbjct: 638 KHTSEIFGKP-VYTYSYREAVAGD---WLID--HEPPIRYETLLNKHGIKFEKGETVTSI 691

Query: 206 VVQYDFSQLAARSDGL-FNNGLFNNGLFNNGRFSDVELNRELKRQQRVTPHIVRQITEYA 264
             Q    + A   D L F+   FN  +     F++V           +   +++++  + 
Sbjct: 692 NTQTGEIETADLEDELKFDVESFNKRVITES-FNEV-----------ICQELIKELDPFG 739

Query: 265 ANRRGVMIFAATVEHAREVAGLLPAS----------EAALISGETPAPQRDALIAAFKQQ 314
             +   MIF AT  HA  V  LL  +          +AA+      + +   LI  +K +
Sbjct: 740 DEK--TMIFCATDVHADMVKRLLDKAFLDMYGDDYNQAAVAKITGQSDKVSQLIRQYKNE 797

Query: 315 QLRYL-VNVSVLTTGFDAPHVDVIAILRPTESVSLYQQIIGRGLRLFP--GKSDCLILDY 371
           +   + + V +L+TG D P +  +  LR  +S  LY+Q++GR  R     GK+   I D 
Sbjct: 798 RYPNIAITVDLLSTGIDVPKICHLVFLRRVKSRILYEQMMGRATRRCDDIGKTAFKIYD- 856

Query: 372 AGNPFDLYT 380
              P D+Y+
Sbjct: 857 ---PVDIYS 862