Pairwise Alignments

Query, 281 a.a., ABC transporter permease from Dickeya dianthicola ME23

Subject, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

 Score =  224 bits (571), Expect = 2e-63
 Identities = 115/272 (42%), Positives = 164/272 (60%), Gaps = 1/272 (0%)

Query: 5   WQQARQQLRRNRPAQLALAILVVFGAASA-LAWLSPWDPNAMTIQARMLPPDGAHWFGTD 63
           WQ AR +  RN+ A ++L +L++   A   L   S +        A    P   HWFGTD
Sbjct: 26  WQDARIRFMRNKAAMVSLFVLMLITLAVVFLPMFSAYSYEDTDWYAMHAGPSAEHWFGTD 85

Query: 64  EYGRDYFTRALYGGQISLLVGVLAMVFSTLIGTLVGTVSGYVGGRLDTVLMRAVDMLMSI 123
             GRD F R L GG+ISL+VG++  + + LIGTL G  SG++GGR D V+MR +++L +I
Sbjct: 86  ALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEILYAI 145

Query: 124 PAFFLLLVLNAYLKPGVANIILIISALTWMSLSRLVRAETLSLKEREYVLYARASGERAW 183
           P  FL++VL  +    +  I + I A+ W+ ++R+VR +TLSL+ +E++  A   G   W
Sbjct: 146 PFMFLVIVLVTFFGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKW 205

Query: 184 CIILRHIIPNILPTIMVAATLNIASAILMESTLSFLGLGVQQPDASWGSMLNNAQAYIGD 243
            II RHI+PN+L  + V +TL I S IL ES LSFLGLGVQ+P  SWG++L      +  
Sbjct: 206 NIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEGANTMEV 265

Query: 244 ATWLALFPGLLILLTVLSFNVLGDVFRTAFEP 275
           A W  LFP   ++LT+  FN +GD  R A +P
Sbjct: 266 AIWQLLFPAAFMVLTLFCFNYVGDGLRDALDP 297