Pairwise Alignments

Query, 311 a.a., tRNA dihydrouridine(16) synthase DusC from Dickeya dianthicola ME23

Subject, 315 a.a., NifR3/Smm1 family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  327 bits (837), Expect = 3e-94
 Identities = 164/308 (53%), Positives = 213/308 (69%), Gaps = 1/308 (0%)

Query: 1   MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDSRLPVKAFYRLCPELRRGSRTP 60
           MRV+LAPMEGV+D L+R++L+ +N YDL +TEF+RVVD  LP K F +LCPEL  G  TP
Sbjct: 1   MRVILAPMEGVVDDLMRDILSSINPYDLLVTEFVRVVDQLLPEKVFLKLCPELLSGGYTP 60

Query: 61  SGTRVRVQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKMVNGSGGGATLLKDPELIY 120
           SGT VRVQLLGQ P  +AENA RA+ELGS GVD N GCP+KMVN S GGA LL+ P  I+
Sbjct: 61  SGTPVRVQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTIH 120

Query: 121 RAAKAMREAVPPSLPVTVKVRLGWDSGDRQFEIADAVAQAGASELVVHGRTKEDGYRAER 180
              +AMR+AVP   PVT K+RLG++      E A AV +AGA+EL +H R+K DGY+   
Sbjct: 121 DIVRAMRQAVPAEHPVTAKIRLGYEDKSLFMENALAVYEAGATELAIHARSKVDGYKPPA 180

Query: 181 INWAAIGEIRRRVRIPVIANGEIWDWQSAQDCMAVTGCDAVMIGRGALNVPNLSRVIKYR 240
             W  I E+R R+ IPVIANGEIW+   A+ CM VTGCD++MIGRGA+++PNL+  IK  
Sbjct: 181 Y-WEYITEVRERLPIPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISLPNLADTIKTG 239

Query: 241 EARMPWPEVVQLLQKYVRLEKQGDTGLYHVARIKQWLGYLRKEYDDASGLFSQIRALTTS 300
                W + +QL+  Y + E  G    Y+ ARIKQW  YL ++Y +A  LF ++R   T+
Sbjct: 240 ATPYSWADTLQLMLSYTQRELSGRKSDYYPARIKQWFSYLNRQYPEADTLFRELRIYKTT 299

Query: 301 ADIARVID 308
            +I RV++
Sbjct: 300 EEIVRVLE 307