Pairwise Alignments

Query, 670 a.a., excinuclease ABC subunit B from Dickeya dianthicola ME23

Subject, 733 a.a., Excinuclease ABC, B subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  778 bits (2008), Expect = 0.0
 Identities = 393/658 (59%), Positives = 494/658 (75%), Gaps = 6/658 (0%)

Query: 5   FKLHSDFKPAGDQPEAIRRLEDGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64
           F+L SD++PAGDQP+AI  L  GL      Q LLGVTGSGKTFT+A VIA++ RPT++LA
Sbjct: 38  FRLASDYQPAGDQPQAIAELLRGLAAQDRDQVLLGVTGSGKTFTMAQVIAEMGRPTLILA 97

Query: 65  PNKTLAAQLYGEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124
           PNKTLAAQLYGE K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEKD+S+NE I++MR 
Sbjct: 98  PNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRH 157

Query: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYARN 184
           +AT+ALLERRDV++VASVS IYG+G  + Y +M++ +  G  + +  +L+ L ELQ+ RN
Sbjct: 158 AATRALLERRDVIIVASVSCIYGIGSVESYSRMIIPIKVGTTLPRADLLKALVELQFTRN 217

Query: 185 DQAFARGTFRVRGEIIDIFPAESEDIALRVELFDEEVERLSLFDPLTGHIVQTVPRYTIY 244
           D AF RG FRVRG+ ++IFPA  ED A RV L+ +E+E +  FDPLTG I  ++   T+Y
Sbjct: 218 DIAFTRGMFRVRGDSVEIFPAHYEDRAWRVSLWGDEIESVREFDPLTGEITASLDEVTVY 277

Query: 245 PKTHYVTPRERILQAMEEIKVELADRRQVLLAGNKLLEEQRLAQRTTFDLEMMNELGYCS 304
           P +H+VTPR  + QA+  IK EL +         K+LE QRL QRTTFDLEM+   G+C 
Sbjct: 278 PASHHVTPRPALSQAVRTIKAELKETLARFYDQGKVLEAQRLEQRTTFDLEMIEATGHCK 337

Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQLGGMYRGDRARKETLVEY 364
            IENYSR L+GR PG+PPPTLF+YLP D LL +DESHV +PQ+GGM+RGD  RK  L E+
Sbjct: 338 SIENYSRHLTGRRPGDPPPTLFEYLPEDALLFVDESHVAVPQIGGMFRGDFNRKSVLAEF 397

Query: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPQLE 424
           GFRLPS +DNRP+KFEE++ + P +I+VSATPG +ELE++GG V +QV+RPTGL+DP   
Sbjct: 398 GFRLPSCVDNRPLKFEEWDVMRPPSIFVSATPGRWELERTGGVVAEQVIRPTGLVDPVCI 457

Query: 425 VRPVTTQVDDLLSEIRKRAVINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484
           +RPV  QVDDLL E++  A   ERVLVTTLTKRM+EDLTEYL E G RVRY+HSDI+T+E
Sbjct: 458 IRPVEAQVDDLLGEVKACAARGERVLVTTLTKRMSEDLTEYLTEQGVRVRYMHSDIETLE 517

Query: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544
           R+EIIRDLRLG FDVLVGINLLREGLD+PE +LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 518 RIEIIRDLRLGAFDVLVGINLLREGLDIPECALVAILDADKEGFLRSRTSLIQTIGRAAR 577

Query: 545 NLNGKAILYADRITPSMERAMNETQRRREKQQAYNEQHGIVPQGLNKKIGDLLQIGQSAN 604
           N+ G+ ILYAD++T S+  A+ ET RRR++QQ YN  HGI P+ +  +I D+L      +
Sbjct: 578 NVGGRVILYADKMTDSLTFAIEETSRRRQRQQDYNAAHGITPETVRSRISDVLSSVYEKD 637

Query: 605 GRGKGRGKKAAEPAAQYQQLSPKALDQKIRELESQMLTHAQNLEFEEAARLRDEIHAL 662
                 G       +   QL  K+L + + +L+ +M   A +LEFEEA RLRDEI  L
Sbjct: 638 YVTVTTG------VSGDNQLVGKSLREHLADLDKRMRAAAADLEFEEAGRLRDEIRRL 689