Pairwise Alignments

Query, 310 a.a., ABC transporter permease subunit from Dickeya dianthicola ME23

Subject, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

 Score =  181 bits (459), Expect = 2e-50
 Identities = 101/310 (32%), Positives = 171/310 (55%), Gaps = 8/310 (2%)

Query: 1   MRAYFIKRLFMTLPLAVVMSFVAFSLLNLVPSDPAEVALRVNDIVPTDEAIQLMHHELGL 60
           M  +  KR+F  +P  +V+  ++F L+   P +P       ++     E +  ++ + GL
Sbjct: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFS-----SERPLPPEVMANINAKYGL 55

Query: 61  DRPFFPRYVLWLWKVLHGDFGTSFITRQ-PVWHVFMQALPATLYLAAVSLLMIVTLSLTL 119
           D+P   +Y+ +L  ++ GDFG SF  +   V  +   ALP ++ +   + +  V + +T+
Sbjct: 56  DKPVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTV 115

Query: 120 GIACALTENTPFDKAVRSVVFLTVAIPNYWIGLLLMWGLAVNMDLFPVGGMQEE--RSVI 177
           G   AL +NT  D  + S   L V +P++ +  +L++  A+   LFP GG Q+     + 
Sbjct: 116 GTIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGGFEYMA 175

Query: 178 LPSCTLMLGYIGTYIRLIRGSMIGNLQQNYVLYARARGLPAPLIIGKHVLANSLHAALVA 237
           LP   + L Y+ T+ R+ RGSMI  L  N++  ARA+GL    I+ KH L  +L   +  
Sbjct: 176 LPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSY 235

Query: 238 IGMSIPKLIAGTVVIENIFAWPGVGRLCLSAIFNRDYPMIQAYMLLMALLFLGFNFLTDV 297
           +G +   +I G+VVIE IF  PG+G+L ++A FNRDY ++    +L+  LF+ FN + D+
Sbjct: 236 MGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDI 295

Query: 298 LQAKLDPRIR 307
           L A +DP+IR
Sbjct: 296 LLAYIDPKIR 305