Pairwise Alignments

Query, 753 a.a., CRISPR-associated endonuclease Cas3'' from Dickeya dianthicola ME23

Subject, 752 a.a., CRISPR-associated helicase Cas3, core (NCBI) from Rhodospirillum rubrum S1H

 Score =  409 bits (1051), Expect = e-118
 Identities = 303/713 (42%), Positives = 386/713 (54%), Gaps = 71/713 (9%)

Query: 28  HLREVAELAAAIAPTALSDWAT-LAGRWHDLGKYRPPFQDYLRKASGYDAENAHIEHAPG 86
           H      LAA  A +  ++ A  LAG  HDLGKY   FQ             A +E AP 
Sbjct: 22  HAFATGHLAAGFAQSFGAEKAARLAGLLHDLGKYCRAFQ-------------ARLEGAPE 68

Query: 87  RVSHSIAGARYAITALGNG--------VGHILAYAISGHHAGLPNGRGDAGSLYNRLTTG 138
           RV H+ AGA   + AL  G        +G IL+Y I+GHH GLP+ +G A  L   L+  
Sbjct: 69  RVDHATAGA-ITVRALLAGSSDRWDRTLGEILSYVIAGHHGGLPDWQGLADRLKADLSGL 127

Query: 139 DDEYQQAREQAIPADILQAIPVSLPPLSEENIALWL----RMLFSCLVDADFLDTERYMS 194
           D  ++   E A+    L   P   P  S+E +   L    RM+FSCLVDADF DTE +  
Sbjct: 128 DPVWRD--EIAVAPQGLA--PSLTPHPSKERLPFQLAFLGRMIFSCLVDADFKDTEAFYE 183

Query: 195 PENAARREKTASLTLASLQ---PRYQSHMHT---LAGRNPQSPLHQLRQSILDETRQAAA 248
            E   R ++   L  A +     R+  HM T   LAG  P S +  LRQ +L + R  AA
Sbjct: 184 REAGTRSDRLWPLLPAIIDRLIARFNDHMATKAPLAGE-PVSAVTLLRQDVLAQARARAA 242

Query: 249 LAPGLFSLTVPTGGGKTLASLGFALDHALRHGKKRIIYAIPYTSIIEQNAAVFRQALGEE 308
           ++ GLF+LTVPTGGGKTLASLGFALDHA RHG +RII+AIP+TSI++Q AAVFR  LGE 
Sbjct: 243 MSEGLFTLTVPTGGGKTLASLGFALDHAKRHGLERIIFAIPFTSILDQTAAVFRDVLGEG 302

Query: 309 AVIEHHCNLDNSDDAR---------ARLACENWDAPVIVTTNVQLFESLHAARPSRCRKL 359
            ++EHH  ++  + AR          RLA E+W AP+I+TT VQLFESL A RP+RCRKL
Sbjct: 303 VILEHHSAIEAEEKARREPPQQRDKLRLAMEDWAAPLILTTTVQLFESLFANRPARCRKL 362

Query: 360 HNLADSVIILDEAQQLPRDFHAPITQVMQQLTELFGVSWLLCTATQPVLEAQRNPFGQLL 419
           H++A SVI+LDEAQ LP     P    + +LT  +  S +LCTATQP L+ +R   G  +
Sbjct: 363 HSIARSVIVLDEAQTLPLPLLKPCVAAIDELTRNYKASVVLCTATQPALDRRRFAAGDDM 422

Query: 420 MPGLAQVREIIARPSQLADVLRRVDVRFSLTPCDWQTLAAELAAQPCVLCIVNTRGDART 479
              LA  RE+   P  LA  L RV +R +    D + +  +LA  P  L IVNTR  A  
Sbjct: 423 GLDLAG-RELAPDPGALAARLVRVTLRQAGVLSD-EDVVTDLADPPQALVIVNTRKHALA 480

Query: 480 LYQRLADD--PDVLHLSAQMCAEHRSQVITQIKQRLAARQQGDSRPLRVISTQLVEAGVD 537
           LY+R  +     V+HLS +    HR  ++  ++QRL         P R+I+T LVEAGVD
Sbjct: 481 LYRRAVEAGLEGVVHLSTRHYGAHRRAILDDVRQRL-----DRGLPCRLIATSLVEAGVD 535

Query: 538 LDFPTVWRAIAGLDAIAQAAGRCNREGKL-TRPGIVQVFMPPALPPAGALRQAAQCTLEM 596
           +DFP VWRA  GLD IAQAAGRCNREG+      IV VF      P  A+ Q A     +
Sbjct: 536 VDFPRVWRAEGGLDQIAQAAGRCNREGRRPVEDSIVTVFRAADHKPPAAVAQLAAAYGRI 595

Query: 597 VNAGLLTDPLSPAAFRDYFTR-FNSKGE-RDRHGIGRLLRAEPDSEIGLALCFRDAAEKF 654
             A    +P SPAA  DYF   + SKG   D H   ++L+A      G  L ++  AE F
Sbjct: 596 --AQNHANPFSPAALEDYFREVYWSKGPGLDEH---KILKAFAWDRSGGTLNYKRVAEDF 650

Query: 655 RLIDDTGVAVIVPWQPDDEEPSPVEYWLQCL-ESDAGAHWVYRKLQRYSVNVP 706
           R+ID     VI+         +     L  L   DA A  V R LQ Y V VP
Sbjct: 651 RMIDSGMAPVII------GRDAQARAALALLGRPDARAGQVARLLQPYLVQVP 697