Pairwise Alignments

Query, 575 a.a., hydrogenase large subunit from Dickeya dianthicola ME23

Subject, 410 a.a., coenzyme F420 hydrogenase subunit alpha from Methanococcus maripaludis S2

 Score = 54.7 bits (130), Expect = 7e-12
 Identities = 78/406 (19%), Positives = 151/406 (37%), Gaps = 41/406 (10%)

Query: 186 RVVPIGPLHITSDEPGHFRLF--VDGEQIID-ADYRLFYVHRGMEKLAETRMGYNEVTFL 242
           + V I P   T+   GH +L   VD + I++  +Y      RG EK    ++       +
Sbjct: 3   KTVEINP---TTRHEGHTKLVLKVDDDGIVEKGNYLSVTPVRGFEKFLVGKVAEFAPIAV 59

Query: 243 SDRVCGICGFTHSVAYTSSIENALGVVVPARAHTIRSILLEVERLHSHLLN-IGLSSHFV 301
           S R CGIC   H+ +   +IE+A G+  P     +R +     ++HSH L+   ++  F+
Sbjct: 60  S-RFCGICPIAHATSSVEAIEDACGITPPKDGLLLRELTGLGNKMHSHPLHEFLIAPDFI 118

Query: 302 GFDTGFMQFFRVRE--KSMQIAEMLTGARKTYGLNL-IGGIRRDILKEDRLKTIRLIREM 358
                     R++E  K+ Q      G    +  N+ +GG+ ++I +    K     RE 
Sbjct: 119 PEADRVEYIKRIQEMRKTGQFIVDTIGGEAIHAPNIKVGGMLKNITENAASKIYYKCREY 178

Query: 359 REEVTQLTDMLLNTANMAQRTQGVGV-----------------------LNRQVARDYSP 395
            +   +  + L+          G  +                       +++    +Y+P
Sbjct: 179 EKLAKEHVEYLIPIFESNMLADGTEIPEKLGYHDFGYIATDATYGNRENIDQSKVVEYTP 238

Query: 396 VGPMIRASGFQRDVRIDHPFAGYLDLPMELHHLDGGDVYSR--VLVRVREVFTSLAMIEF 453
                +    Q    I       +++          D  ++  + + +   + ++  ++ 
Sbjct: 239 YDVYEKDVAVQACTTIPRYNGRLMEVGPRARFAKFHDFKNKGAMAIHIARAYENVVHVKR 298

Query: 454 GLDNMPDGPI-----LNEHINYQPHKFALGFTEAPRGEDIHWSMTGDNQKLFRWRCRAAT 508
            ++ + +  +      NE I     K  LG  EA RG + H +      ++  +    AT
Sbjct: 299 AMEIIDELDVNGKTRSNEPILGDGEKIGLGVHEAARGHNTHQAAIDAKGRITYYNAIVAT 358

Query: 509 YANWPVLRFMLRGNTISDAPLIIGSLDPCYSCTDRVTLVDVRKKKV 554
             N P++     G     A  ++ + DPC SC   V  +D   K V
Sbjct: 359 TWNIPLIGKATEGTHYKFAEHVVRAYDPCVSCATHVIAMDYDNKIV 404