Pairwise Alignments

Query, 877 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Dickeya dianthicola ME23

Subject, 812 a.a., DNA gyrase, A subunit (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  797 bits (2059), Expect = 0.0
 Identities = 415/835 (49%), Positives = 568/835 (68%), Gaps = 39/835 (4%)

Query: 11  VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSARVV 70
           V+IE+EL+ SYL+Y++SVI+GRA+PD RDGLKPVHRR+++A   LGN + +P KKSARVV
Sbjct: 5   VSIEKELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQHELGNGYTRPPKKSARVV 64

Query: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRMSKI 130
           GDVIGKYHPHGDSAVYD +VRMAQ FS+R  LVDGQGNFGSIDGD+AAAMRYTEVRMS++
Sbjct: 65  GDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMSRL 124

Query: 131 AHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSEV 190
           A E L+D+DKETVDF PNYD T   P V+PT++PNLL+NGSSGIAVGMATNIPPHNL E+
Sbjct: 125 AGEFLADIDKETVDFRPNYDNTLLEPSVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 184

Query: 191 INGCLAYIDDENISVEGLMTHIPGPDFPTAAIINGKRGIEEAYRTGRGKVYIRARAEVEA 250
               L  +D+   +VE LM H+ GPDFPTA  +   +G+ +AY TGRG V +R + E+E 
Sbjct: 185 CGALLHIVDEPGCTVEDLMDHVKGPDFPTAGFVYAGQGLYDAYTTGRGTVKVRGKVEIE- 243

Query: 251 DAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIEIKRD 310
           + K G + I++ EIP+ +NK+ L+EKIA LV E++I+G++ LRDESD+ G+R+VI++KR 
Sbjct: 244 ERKKGLQAIVIREIPFALNKSSLVEKIAALVNERKIDGVADLRDESDRKGIRVVIDLKRG 303

Query: 311 AVGEVVLNHLYSQTQMQVSFGINMVALHQGQPKVMTLKEILAAFVRHRREVVTRRTIFEL 370
            + ++V+N LY  T ++ SFGINM+A+   +P+++ LK+ L  F+ HRREV+ RRT ++L
Sbjct: 304 TIPDIVVNALYKYTPLESSFGINMLAVVGNRPQLLNLKQALEIFLEHRREVIIRRTRYDL 363

Query: 371 RKARERAHILEGLAIALVNIDPIIELIRHASTPADAKAALVAQAWELGSVASMLERAGDD 430
           RKA  RAHILEGL IAL NID ++ LIR + TP DAK AL+                   
Sbjct: 364 RKAEARAHILEGLRIALDNIDEVVALIRASKTPQDAKDALMG------------------ 405

Query: 431 AARPEWLEPEFGIHDDRYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLGQIAELLF 490
                           R+ L+E QAQAILD+RLQ+LT LEHEKL++EY ELL +I     
Sbjct: 406 ----------------RFTLSEAQAQAILDMRLQRLTNLEHEKLIEEYNELLKKIEFFRS 449

Query: 491 ILRRPERLMEVIREELLAIREQYNDVRRTEITHNSAD-INIEDLISEENVVVTLSHQGYV 549
           +L  PE L  VIREE+  +R+ +   RRTE+     D I+IEDLI +E+VV+TLS +GY+
Sbjct: 450 VLENPEVLRSVIREEIGELRDTFATKRRTEVLEEELDGIDIEDLIPDEDVVITLSRRGYI 509

Query: 550 KYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWLKVYQLPE 609
           K   L +Y+ QRRGGKG +     E+DF+   L    H  +L F++ GR++ +KV+++PE
Sbjct: 510 KRTTLDNYQQQRRGGKGIAGVHTSEDDFVQDFLTTTNHQYLLLFTNHGRMHQIKVHRVPE 569

Query: 610 ASRGARGRPIINLLPLEPDERITAILPVREYEEGMNVFMATASGTVKKTALTEFSRPRSA 669
            SR A+G  I NL+ L+ DE +T +L VRE+ E       T  G VK+++ + +++ R  
Sbjct: 570 GSRTAKGVHIANLVQLDKDELVTNVLTVREFAEDRYFLFVTRRGMVKRSSASLYAKCRKT 629

Query: 670 GIIAVNLNEGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTMGRTATGVRGINLQND 729
           G+IAV L   DELI V   D    ++L + +G  +RF    VR MGR+ATGV+GI L+  
Sbjct: 630 GLIAVGLRPDDELIMVREVDEHCHIVLTTGDGMAIRFQCEDVRPMGRSATGVKGIALRGK 689

Query: 730 DRVVSLIVPRGEGD---ILTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERNGKVVGA 786
           DRVV+ ++   E     I++V+ NGFGKRT    Y V+SR   GV + KV+ + G V+GA
Sbjct: 690 DRVVACVILAEEDTTSMIMSVSANGFGKRTKADLYRVQSRGGVGVKNFKVTPKTGDVIGA 749

Query: 787 VQVDTADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDERVVGLQRVAE 841
           + V   D ++++T    ++R  +++V  VGR TQGV L+R  E   VVG  R+ E
Sbjct: 750 MPVRDDDALVLLTSTNKILRMGLNDVRSVGRATQGVRLVRLDEGALVVGFDRIDE 804



 Score = 41.2 bits (95), Expect = 3e-07
 Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 4/108 (3%)

Query: 741 EGDILTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERNGKVVGAVQVDTADQIMMITD 800
           E  ++T+++ G+ KRT +  Y  + R  KG+  +  SE +  V   +       +++ T+
Sbjct: 497 EDVVITLSRRGYIKRTTLDNYQQQRRGGKGIAGVHTSE-DDFVQDFLTTTNHQYLLLFTN 555

Query: 801 AGTLVRTRVSEVSIVGRNTQGV---TLIRTAEDERVVGLQRVAEPVED 845
            G + + +V  V    R  +GV    L++  +DE V  +  V E  ED
Sbjct: 556 HGRMHQIKVHRVPEGSRTAKGVHIANLVQLDKDELVTNVLTVREFAED 603