Pairwise Alignments

Query, 674 a.a., DNA topoisomerase III from Dickeya dianthicola ME23

Subject, 867 a.a., DNA topoisomerase I, bacterial from Pseudomonas stutzeri RCH2

 Score =  130 bits (327), Expect = 3e-34
 Identities = 159/584 (27%), Positives = 238/584 (40%), Gaps = 85/584 (14%)

Query: 87  ITRLLKQSDEVVIATDADREGEVIARELLEYCRFNGVVSRLWLSALDEASVRKAL--ANI 144
           + RL K++D + +ATD DREGE IA  L E     G  SR      +E + +KA+  A  
Sbjct: 100 LRRLAKEADTIYLATDLDREGEAIAWHLRE--SIGGDDSRYKRVVFNEIT-KKAIQEAFS 156

Query: 145 RPGNETENLYYAGLGRGRADWLIGMNISRLYTLKARELGYDGVLSVGRVQTPALALVVNR 204
           +PG+   N   A   R   D ++G  +S L   K         LS GRVQ+ A+ LVV R
Sbjct: 157 KPGDLDLNRVNAQQARRFLDRVVGYMVSPLLWAKIAR-----GLSAGRVQSVAVKLVVER 211

Query: 205 DRLIASFVPKPYFQVNVKLESGGVVFPAEWVAAAAYTDGER-RCVNQAVAEQVRKLCLTV 263
           +R I +FVP+ Y++V+  L S      A+     A  +GE  + +N+A A    +  L  
Sbjct: 212 EREIRAFVPEEYWEVHADLASAQ---QAKVRFEVARENGEAFKPLNEAQANAALEK-LKG 267

Query: 264 GKAVILDVEKKREKIPAPLAFSLGVLQQVCAERFGYSPQQVLDTAQALYETHKATTYPRT 323
            K  +   E K         F    LQQ  + R G+  ++ +  AQ LYE     TY RT
Sbjct: 268 AKYSVSKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEA-GYITYMRT 326

Query: 324 DCGYLPESMLSEVPHVLSALQQSDPSLAPVIASIDPSFRSRIWDDKK--ITAHHAIIPTP 381
           D   L    +  V   +   +  D  L           +  ++  K+    AH AI P+ 
Sbjct: 327 DSTNLSADAIGMVRGFIEG-EFGDKYLPE---------KPNVYSSKEGAQEAHEAIRPSD 376

Query: 382 ---HKCNLAGMNEAERNVYTLIRTHYLAQFMPLLEMDVTRASFNIGGQLFRTSGRVTVVP 438
                  L+GM      +Y LI   ++A  MP  +   T  +   G    R  GR+    
Sbjct: 377 VNLRPTQLSGMERDAERLYELIWRQFVACQMPPAQYLSTSVTVAAGDFELRAKGRILKFD 436

Query: 439 GWKTLFGQAAASDSDERDDEAAAVSLPPLTKDAVCGIRGAELKALK-------TKPPQPY 491
           G+  +  Q + +  D+         LP + K       G ++K LK       TKPP  Y
Sbjct: 437 GYTKVMPQQSKAGEDD--------VLPEMNK-------GDDMKLLKLDPSQHFTKPPARY 481

Query: 492 SFKTLIAAMMNAAGLVDDPALKKVLRDNAGLGTEATRAGILDVLMKRGFLIKKGNHLHAS 551
           S  +L+  M                 +  G+G  +T A I+  +  RG++       ++ 
Sbjct: 482 SEASLVKEM-----------------EKRGIGRPSTYAAIISTIQDRGYVSLHNRRFYSE 524

Query: 552 DTACDLVDALPAA---LTQVGMTALWEQALDDIAAG----KMTLDSFVD--RQLRWVNQL 602
                + + L  +   L   G TA  E+ LDD+A G    K  LD F    R+   V + 
Sbjct: 525 KMGDIVTERLSESFNNLMDYGFTAGMEEHLDDVAQGERDWKHVLDEFYGDFRKKLEVAEA 584

Query: 603 VEQGKQ--QAFTIRVPERPKCPLCGGRTRLRKGPNGTFYGCENY 644
            E G +  Q     +P    C +CG    +R    G F GC  Y
Sbjct: 585 SENGMRANQPTLTDIP----CKVCGRPMMIRTASTGVFLGCSGY 624



 Score = 28.9 bits (63), Expect = 0.001
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)

Query: 603 VEQGKQQAFTIRVPERP--KCPLCGGRTRLRKGPNGTFYGCEN 643
           +E+G+   + I+  E P  +C  CG   +L+ G  G F+GC N
Sbjct: 695 IEKGQ---YRIKGYEGPSLECDKCGSEMQLKTGRFGKFFGCTN 734