Pairwise Alignments

Query, 674 a.a., DNA topoisomerase III from Dickeya dianthicola ME23

Subject, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

 Score =  423 bits (1088), Expect = e-122
 Identities = 244/617 (39%), Positives = 348/617 (56%), Gaps = 22/617 (3%)

Query: 2   RLFLCEKPSQGRDIAAVLGAS-KRGQGFLSGPD-TVVTWAVGHLLENAMPELYGEQYGKP 59
           RLF+ EKPS  R IA  L    K+ QG +   +  +VTW +GHLLE   P+ Y E+Y K 
Sbjct: 3   RLFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERY-KK 61

Query: 60  WRLDVLPLLPQKWQMVVKKDTADQFAVITRLLKQSDEVVIATDADREGEVIARELLEYCR 119
           W +  LP++P++WQ+  +K ++ Q  V+ +LLK++ +++ A D DREG+++  E+++YC+
Sbjct: 62  WNMADLPIIPEQWQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCK 121

Query: 120 F----NGVVSRLWLSALDEASVRKALANIRPGNETENLYYAGLGRGRADWLIGMNISRLY 175
                   V RL +S L+ ++V++AL  +R   E   L  + L R RADWL GMN+SR Y
Sbjct: 122 VPKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAY 181

Query: 176 TLKARELGYDGVLSVGRVQTPALALVVNRDRLIASFVPKPYFQVN--VKLESGGVVFP-- 231
           TL  ++ GY GVLSVGRVQTP L LVV RD  I  F+P  YF ++  +  ++G   F   
Sbjct: 182 TLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIR 241

Query: 232 AEWVAAAA---YTDGERRCVNQAVAEQVRKLCLTVGKAVILDVEKKREKIPAPLAFSLGV 288
           A W  + A   + D E R  N+ + + V    +    A + + E+ + K  APL +SL  
Sbjct: 242 ARWKPSEACLPWQDEEGRVTNRKLVDNVASR-IANQPATVTESEQDQTKQAAPLPYSLSA 300

Query: 289 LQQVCAERFGYSPQQVLDTAQALYETHKATTYPRTDCGYLPESMLSEVPHVLSALQQSDP 348
           LQ   A+R+ +S QQVLD  Q+LYE HK  TYPR+DC YLP+  L++ P V++A+  +  
Sbjct: 301 LQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQ 360

Query: 349 SLAPVIASIDPSFRSRIWDDKKITAHHAIIPTPHKCNLAGMNEAERNVYTLIRTHYLAQF 408
            +   +   D S RS+ W+D K+ AHHAIIPTP K ++  ++  E  VY LI   YL QF
Sbjct: 361 EMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQF 420

Query: 409 MPLLEMDVTRASFNIGGQLFRTSGRVTVVPGWKTLFGQAAASDSDERDDEAAAVSLPPLT 468
            P       +  FNI G +F   GR  +  GWK L GQ       + + E     +PPL 
Sbjct: 421 YPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQ-------QDEQEECVDKVPPLP 473

Query: 469 KDAVCGIRGAELKALKTKPPQPYSFKTLIAAMMNAAGLVDDPALKKVLRDNAGLGTEATR 528
              V   R  E+K  +T+PP+ ++  TL+ AM   A  V D  LKK+LR+  GLGTEATR
Sbjct: 474 VGIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATR 533

Query: 529 AGILDVLMKRGFLIKKGNHLHASDTACDLVDALPAALTQVGMTALWEQALDDIAAGKMTL 588
           AGILD L KRG L +    + ++     L+ ALP+  T   MTA WE  L  IA      
Sbjct: 534 AGILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPSEATYPDMTAHWEHQLQAIAEKGQAY 593

Query: 589 DSFVDRQLRWVNQLVEQ 605
             F+      + QL+EQ
Sbjct: 594 QPFMQTLQGRLEQLIEQ 610