Pairwise Alignments

Query, 674 a.a., DNA topoisomerase III from Dickeya dianthicola ME23

Subject, 694 a.a., DNA topoisomerase III (RefSeq) from Shewanella amazonensis SB2B

 Score =  429 bits (1104), Expect = e-124
 Identities = 252/621 (40%), Positives = 363/621 (58%), Gaps = 20/621 (3%)

Query: 1   MRLFLCEKPSQGRDIAAVLGAS-KRGQGFLS-GPDTVVTWAVGHLLENAMPELYGEQYGK 58
           M L++ EKPS GR IA VL    K+G+G++  G    VTW +GHLLE A P+ Y  +Y K
Sbjct: 25  MILYIAEKPSLGRAIAEVLPKPHKKGEGYIELGNGDCVTWCIGHLLEQAEPDAYSPEY-K 83

Query: 59  PWRLDVLPLLPQKWQMVVKKDTADQFAVITRLLKQSDEVVIATDADREGEVIARELLEYC 118
            W+L  LP++P +W++  +     Q AV+ RL+KQ+  +V A D DREG+++  E++ + 
Sbjct: 84  QWQLAHLPIIPAEWKLTPRSSAKSQLAVVKRLIKQASSLVHAGDPDREGQLLVDEVISHA 143

Query: 119 RFNGV----VSRLWLSALDEASVRKALANIRPGNETENLYYAGLGRGRADWLIGMNISRL 174
           + +        RL +S L+  +VR+AL  +R   E   L  + L R RADWL G+N++R 
Sbjct: 144 KVSASKLASTQRLLISDLNPDAVRRALGQLRSNKEFVPLATSALARSRADWLYGLNMTRA 203

Query: 175 YTLKARELGYDGVLSVGRVQTPALALVVNRDRLIASFVPKPYFQVNVKLESG-GVVFPAE 233
           YTL+ R++GY GVLSVGRVQTP L LVV RD  I  F PK +++V   + +  G  F A+
Sbjct: 204 YTLQGRKVGYAGVLSVGRVQTPLLGLVVRRDLDIEHFEPKDHYEVLAHITTDKGESFCAK 263

Query: 234 WVAAAA---YTDGERRCVNQAVAEQVRKLCLTVGKAVILD-VEKKREKIPAPLAFSLGVL 289
           W  + A   Y D E R +++ +AE V  +    GK  +++ V  K +K   PL +SL  L
Sbjct: 264 WQPSEACQPYMDEEGRVLSRRLAETV--VSRIGGKPALVEHVSHKDKKQAPPLLYSLSAL 321

Query: 290 QQVCAERFGYSPQQVLDTAQALYETHKATTYPRTDCGYLPESMLSEVPHVLSALQQSDPS 349
           Q  CA+RFG S ++VLDTAQ+LYE HK  TYPR+D  +LP+  L+ VP VLSA+  + P 
Sbjct: 322 QIDCAKRFGMSAKEVLDTAQSLYERHKLITYPRSDSRHLPKEQLALVPDVLSAVSANAPE 381

Query: 350 LAPVIASIDPSFRSRIWDDKKITAHHAIIPTPHKCNLAGMNEAERNVYTLIRTHYLAQFM 409
           L     S D    S+ WDD K+ AHHAI+PT  +  L+ +N+ ER +Y  I   YLAQF 
Sbjct: 382 LLEGAPSPDLHLVSKAWDDSKVDAHHAIVPTGKRTALSQLNQRERQLYLHIARQYLAQFY 441

Query: 410 PLLEMDVTRASFNIGGQLFRTSGRVTVVPGWKTLFGQAAASDSDE-----RDDEAAAVSL 464
           P   +  T     I G  F     V   PGW+ LF Q  +++ DE       D +    L
Sbjct: 442 PNRLLADTEIQLIIEGGSFIARASVERAPGWRVLF-QGRSTEQDEAKEPQETDASQKTPL 500

Query: 465 PPLTKDAVCGIRGAELKALKTKPPQPYSFKTLIAAMMNAAGLVDDPALKKVLRDNAGLGT 524
           P L K  +      EL A +T+PP+ ++  TL++AM   A  V  P +K++L+D  GLGT
Sbjct: 501 PALNKGDIARCCHGELLAKQTQPPKHFTDATLLSAMTGIARYVSSPDIKRILKDTDGLGT 560

Query: 525 EATRAGILDVLMKRGFLIKKGNHLHASDTACDLVDALPAALTQVGMTALWEQALDDIAAG 584
           EATRAGI+++L KRGFL+++G  + AS     L+ +LP   T   MTALWE+ L DI   
Sbjct: 561 EATRAGIIELLFKRGFLVRQGKSIVASQAGRGLIASLPEVATTADMTALWERQLSDICQR 620

Query: 585 KMTLDSFVDRQLRWVNQLVEQ 605
           +++   F+   +  + +L+EQ
Sbjct: 621 QLSYKGFMTPLVLELEKLIEQ 641