Pairwise Alignments

Query, 674 a.a., DNA topoisomerase III from Dickeya dianthicola ME23

Subject, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

 Score =  174 bits (440), Expect = 2e-47
 Identities = 176/676 (26%), Positives = 284/676 (42%), Gaps = 86/676 (12%)

Query: 3   LFLCEKPSQGRDIAAVLGASKRGQGFL--------SGPDTVVTWAVGHLLENAMPELYGE 54
           L +CEKP+  + IA  LG  K+             +G   VV  AVGHL        Y  
Sbjct: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHL--------YTL 55

Query: 55  QYGKPWRLDVLPLLPQKW----QMVVKKDTADQFAVITRLLKQSDEVVIATDADREGEVI 110
           Q     +    P+    W     +  KK        + ++ K +++  +ATD D EGE+I
Sbjct: 56  QEKTKTKFGDYPVYDINWVPASTLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEGELI 115

Query: 111 ARELLEYCRFNGVVSRLWLSALDEASVRKALANIRPGNETENLYYAGLGRGRADWLIGMN 170
               L +        RL  S+L +  + KA  N  P      L  AG  R + DW  G+N
Sbjct: 116 GYHALNFSCGQKNAHRLRFSSLTKKEILKAYEN--PNEIDFGLVDAGDSRHKIDWYFGIN 173

Query: 171 ISRLYTLKARELGYDGVLSVGRVQTPALALVVNRDRLIASFVPKPYFQVNVKLESGGVVF 230
           +SR        +     LS GRVQ PALA +V+++  I +FVP PY+ +   L++  +  
Sbjct: 174 VSRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALLDNDLIAV 233

Query: 231 PAEWVAAAAYTDGERRCVNQAVAEQVRKLCLTVGKAVILDVEKKREKIPAPLAFSLGVLQ 290
                    + D E+   N+A  E+V+       +A + DV+K  + IP    F LG LQ
Sbjct: 234 HE----LEKFWDEEQ--ANKAY-EKVKGQ----KQATVSDVKKSMKTIPPNPPFDLGALQ 282

Query: 291 QVCAERFGYSPQQVLDTAQALYETHKATTYPRTDCGYLPE--SMLSEVPHVLSALQQSDP 348
           +     F +SP++  + AQ LYE     +YPRT    LP+  + + EV   LS  +   P
Sbjct: 283 REAHNMFRFSPKKTQEVAQKLYEKGYC-SYPRTSSQKLPDDKAYMDEVLKNLSKNKNYKP 341

Query: 349 SLAPVIASIDPSFRSRIWDDKKITAHHAIIPTPHKCNLAGMNEAERNVYTLIRTHYLAQF 408
            +  ++         +  DD    A HA+     K     + + E  +Y LI    +A +
Sbjct: 342 YIETILNENRKPISGKN-DDPAHPAVHAVDVPKEK-----LPDDELKLYELIARRTIALY 395

Query: 409 MPLLEMDVTRASFNIGGQLFRTSGRVTVVPGWKTLFGQAAASDSDERDDEAAAVSLPPLT 468
               + + ++ + +I G+ F+ SG  TV  GW  ++      +          V LP L 
Sbjct: 396 WDNAKREYSKINLDINGETFKLSGSRTVEEGWHEIYYYTKFDE----------VELPELK 445

Query: 469 KDAVCGIRGAELKALKTKPPQPYSFKTLIAAMMNAAGLVDDPALKKVLRDNAGLGTEATR 528
           K+ V  +     +A +TKPP+ Y+  ++I  +                 +   LGT+ATR
Sbjct: 446 KNDVINVNNINFEAKETKPPKRYTMASIIKEL-----------------EKRKLGTKATR 488

Query: 529 AGILDVLMKRGFLIKKGNHLHASDTACDLVDALP---AALTQVGMTALWEQALDDIAAGK 585
           A IL+ L KRG++I+ G+ L  +D    + + L      + +  +T   E  L+ I   K
Sbjct: 489 ADILEKLTKRGYVIEDGS-LTVTDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKK 547

Query: 586 MTLDSFVDRQLRWVNQLV--------EQGKQQAFTIRVPERP-----KCPLCGGRTRLRK 632
           +  +  +      + +++        E G +    +    R      KC   G    +R 
Sbjct: 548 IKKEEVIQETKDKLTKILGEFRLKEKEIGTELVDKLDSTNRSLQIIGKCKCGGDMIIIRT 607

Query: 633 GPNGTFYGCENYPTCK 648
                F GC NYP C+
Sbjct: 608 KGKKRFVGCSNYPDCE 623



 Score = 47.8 bits (112), Expect = 2e-09
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 617 ERPKCPLCGGRTRLRKGPNGTFYGCENYPTCK 648
           E   CP CG +  ++KGP G F GCENYP CK
Sbjct: 680 EEKICPKCGNKLLIKKGPYGVFRGCENYPKCK 711



 Score = 44.3 bits (103), Expect = 2e-08
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 620 KCPLCGGRTRLRKGPNGTFYGCENYPTCKGIVDSGANNKRRNRSGSSKSFNKKQ 673
           KCP CG     RKG  G F GC NYP C+       + K+ +  G +K+  KK+
Sbjct: 728 KCPKCGSDLYKRKGRFGEFIGCSNYPKCRH--TEKIDKKKEDTPGETKAETKKE 779