Pairwise Alignments

Query, 1021 a.a., efflux RND transporter permease subunit from Dickeya dianthicola ME23

Subject, 1067 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  295 bits (755), Expect = 1e-83
 Identities = 256/1047 (24%), Positives = 472/1047 (45%), Gaps = 59/1047 (5%)

Query: 13   AWALAHQQLVAFFMLVIVAAGVMSYERLPRNEDPAFTIKTAVVSASWPGATVQDTVSFVT 72
            A A  +  +     LV +  G+ +    P+ E+P   +  A V   +PGA+ ++  S VT
Sbjct: 27   AAAFQNSAMTPLLALVGLLMGLFAVMVTPKEEEPQIDVTFADVYIPFPGASPREVESLVT 86

Query: 73   DVLEKKLQETPYLDFIESYSRPGEAVIFVNLRDSTPPSEVQGIWYAIRKKMKDIAPSLPD 132
               E+ + E   +D I S+S+P  A+I    +   P ++     Y      KD  P    
Sbjct: 87   TPAEQVISEIEGIDKIYSFSQPDGAMIVAIFKVGVPRNDAVVRIYNKLYSNKDWMPQ-GV 145

Query: 133  GVGEPAVNDEFDDTFGTI---YGFTADGYSPRELRDRVDDIRTELLATPDVGKIDVLGVQ 189
            GVGEP +  +  +    +       +D +  ++L      + TEL   P    I  +G Q
Sbjct: 146  GVGEPIIKPKGIEDVPIVTITLADKSDRFDQQQLTQVAHGLETELKRIPGTRDIYTIGGQ 205

Query: 190  DEQIVAAFSPRQLAGMGLDLQQVTAALQAQNAVSPTGAIRTDNDKVALRVSGAFVSEESL 249
            +  +     P ++ G G+ L Q+  +L A N  SP   +  DN +  ++V       E +
Sbjct: 206  NTIVDVRLDPAKMNGFGITLDQLNQSLPAANQSSPMLRLTHDNQEFPVQVGQFLTRVEEV 265

Query: 250  RQVTLHI-GGRFIPLTDIATV---YRQAAEPPAPAFRVNGQPAIGLAVSMAPTGNMLDFG 305
            +Q+ + +  G  + L DIATV      A +      R    PA+ +AV+     N +D  
Sbjct: 266  KQLVVGLHNGTPVYLEDIATVSFGVNTATQNVWTGDRDGIHPAVTIAVAKKGGENAVDVA 325

Query: 306  QALRSKMATIGASL-PHGIEVINVADQSSVVKSSVNGFVKVLLEAVVIVLAVSFVSLGSR 364
            +A+ +++ ++   L P GI+V    D         N  +  L  A   V+ +  +++G R
Sbjct: 326  KAVEARLVSLENQLIPQGIDVDITRDYGQTAADKSNTLMGKLAFATTAVVILVLLTMGWR 385

Query: 365  AGLVVAASIPMVLTMTFTGMEIAGIGLQRISLGALIIALGLLVDDAMITVEAMVSSLEKG 424
              +VV  +I + L +T       G  L R+SL ALI ++G+LVDDA++ VE +   +  G
Sbjct: 386  ESIVVGMAIIVTLMITLFASWAWGFTLNRVSLFALIFSIGILVDDAIVVVENIHRHMAMG 445

Query: 425  EAR-EQAATRAYDTTAFPMLTGTLVMVAGFIPVGFAASSAGEYCYSLFIVVLISLLSSWA 483
            + +  +    A D    P +  TL ++A  +P+ F +   G Y   + I   + +L S A
Sbjct: 446  KRKLSELIPPAVDEVGGPTILATLTVIAALLPMAFVSGLMGPYMSPIPINASMGMLISLA 505

Query: 484  VAVLFSPLIGVWLLPKAMNAHDHHA------GRLSRAYDRLLSTALRYRGRTLLLSVALL 537
            VA + SP    WL  K + A  H        G   +     ++   + R R  LL   L 
Sbjct: 506  VAFVLSP----WLAGKFLKAGHHQEEGKAANGIFHKIMSPFVTAPKQGRNRLFLL---LT 558

Query: 538  ALAVVAAGRLEGEF-------FPASDRPELLVSLTLPRNASQQATEREVVRLEQSLKNDP 590
             LA++A   L   F        P  ++ E  + L +P  +S + T+R +  +  +L + P
Sbjct: 559  ILALIAGSVLLPVFQAVVLKMLPFDNKSEFQIVLDMPEGSSLEKTQRVLFEMGATLNDVP 618

Query: 591  DLDHFSTYVG-------SGAVRFYLPMDVLLQNENIAQLVVVAKGLKERD----ALRARL 639
            ++  +  Y G       +G VR Y   +   Q +    L+    G KERD     + ++L
Sbjct: 619  EVRDYQIYAGTAAPINFNGLVRHYFMRNQAHQGDIQVNLL----GRKERDRDSHTIASQL 674

Query: 640  EKRLQQDFSHLVTRVSPLEL--GPPVGWPLKYRVTGPDIDKVREYAAGLATLIGGNPDAR 697
              +L +       +V  +E+  GPPV  P+   V GP  +   E A  +  +     D  
Sbjct: 675  RPQLNEIAQRFGGKVKVVEVPPGPPVWSPILAEVYGPTQEIRNEAARKVREIFRETKDIV 734

Query: 698  EVNLTAGEPERAIRIDLNQTEARAVGISSQDVASALATIFSGSVVTSVRDRNRM--VGVV 755
            +V++   E     ++ +++++A  + +    +  ALAT   G  +T +   +    + + 
Sbjct: 735  DVDMYLPERHEKWQVVIDRSKAAHLQVPYASIVDALATAVGGKPITYLHSEHSKYPIPIQ 794

Query: 756  VRARDEERQNLDTVASLQLRAANGQRVPLGQIASVGYGVDEPIIWRRQRLPFITVQTDL- 814
            ++A +  +  L+ V ++++ + NG   PL  +  V     +  I  +  +P + V  D+ 
Sbjct: 795  IQATETAKVRLEQVLNMKVGSPNGHAYPLSDLVEVRQTRMDDYIVHKNLVPMVMVVGDMS 854

Query: 815  ----APGVRAQTLSTTLAPQ--VAAYQAALP---AGYHIEEGGSAAESNKGNNSVYQVLP 865
                +P      +   L  Q  +A Y    P   +G  +   G    + +    +     
Sbjct: 855  GELDSPLYGMFEIGFALDEQMGLAQYYIHQPDGLSGVAVAWDGEWTVTYETFRDMGIAYA 914

Query: 866  VTLLVMLILLMVQLQRFSRMMLALLMAPFGLIGVVAAMLPTGTPMGFVALLGVIALAGMI 925
            V ++++ +L++ Q + +   ++ +   P  +IGV+      G      +++G+IALAG+I
Sbjct: 915  VGMVLIYLLVVAQFKSYLVPLIIMAPIPLTIIGVMPGHALLGAQFTATSMIGMIALAGII 974

Query: 926  IRNAVILISEVDTNTAAGMTTNEAIIHAARHRSRPILLTALAAILGMIPIATQVFWGPMA 985
            +RN+++L+  ++     GM  +EA+I +A  R++PI+LTALAA++G + I     +  +A
Sbjct: 975  VRNSILLVDFINQQVEQGMAFSEAVIQSAAVRAKPIMLTALAAMIGAVFILDDPIFNGLA 1034

Query: 986  YAIIGGLIVATLLTLTVLPAAVSLVMQ 1012
             ++I G+ V+T+LTL V+P    +VM+
Sbjct: 1035 ISLIFGIFVSTVLTLLVIPVLYYVVMR 1061