Pairwise Alignments

Query, 1021 a.a., efflux RND transporter permease subunit from Dickeya dianthicola ME23

Subject, 1016 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  479 bits (1232), Expect = e-139
 Identities = 295/1003 (29%), Positives = 515/1003 (51%), Gaps = 10/1003 (0%)

Query: 10   NLSAWALAHQQLVAFFMLVIVAAGVMSYERLPRNEDPAFTIKTAVVSASWPGATVQDTVS 69
            +++ + LA +  V   + + +  G +SY +L R EDP F I+ AV+   +PGAT Q+   
Sbjct: 2    DIARYTLAKRTSVWVLIALTLIGGYISYLKLGRFEDPEFVIRQAVIVTPYPGATAQEVSD 61

Query: 70   FVTDVLEKKLQETPYLDFIESYSRPG--EAVIFVNLRDSTPPSEVQGIWYAIRKKMKDIA 127
             VTDV+E  +Q    L  ++S S  G  E  + + L  +   +++Q +W  +R+K+ D  
Sbjct: 62   EVTDVIEGAVQALQELKEVKSVSMQGRSEVTVEIKLEFAKSSAQLQQVWDKLRRKVADAQ 121

Query: 128  PSLPDGVGEPAVNDEFDDTFGTIYGFTADGYSPRELRDRVDDIRTELLATPDVGKIDVLG 187
              LP G G   VND+F D +   Y  T +G+S ++L+D VD +R EL+  P V K   L 
Sbjct: 122  RQLPPGAGASIVNDDFSDVYALFYAVTGEGFSDKQLQDYVDTLRRELVLVPGVAKAATLA 181

Query: 188  VQDEQIVAAFSPRQLAGMGLDLQQVTAALQAQNAVSPTGAIRTDNDKVALRVSGAFVSEE 247
             Q E I    S  ++A  GL +++V   LQ Q+ V+  G++     ++ +       S  
Sbjct: 182  EQQEAIFIEMSSERMAEFGLSVERVLQVLQKQSLVTVAGSVDAQQMRIPVIPKSNISSLA 241

Query: 248  SLRQVTLHIGGR--FIPLTDIATVYRQAAEPPAPAFRVNGQPAIGLAVSMAPTGNMLDFG 305
             L  + + +G     + L DIA + R   EP +   R NGQ AIG  +S    GN+++ G
Sbjct: 242  DLTNLQVAVGSNNAVVRLGDIANISRGYTEPASMLMRYNGQRAIGFGISNVTGGNVVEMG 301

Query: 306  QALRSKMATIGASLPHGIEVINVADQSSVVKSSVNGFVKVLLEAVVIVLAVSFVSLGSRA 365
             A+++++A + +  P G+++  ++ QS  V++SV  F+  L+ AV IV  V  + +G R+
Sbjct: 302  DAVKARLAELESQRPLGMDLHVISMQSDSVRASVANFIDNLIAAVAIVFVVLLLFMGVRS 361

Query: 366  GLVVAASIPMVLTMTFTGMEIAGIGLQRISLGALIIALGLLVDDAMITVEAMVSSL--EK 423
            G+++   + + +  T   M I  I +QRISLGALIIALG+LVD+A++  + ++     E 
Sbjct: 362  GVIIGFVLLLTVAGTLCVMLIDDIAMQRISLGALIIALGMLVDNAIVVTDGVLVRFQQEP 421

Query: 424  GEAREQAATRAYDTTAFPMLTGTLVMVAGFIPVGFAASSAGEYCYSLFIVVLISLLSSWA 483
               ++Q  +   + T +P+L GT+V +  F  +G + S  GEY  SLF V+L S+  SW 
Sbjct: 422  NADKQQVVSEVVNATKWPLLGGTVVGIFAFSAIGLSPSDMGEYAGSLFWVILYSMFLSWV 481

Query: 484  VAVLFSPLIGVWLLPKAMNAHDHHAGRLSRAYDRLLSTALRYRGRTLLLSVALLALAVVA 543
             AV  +P++    L       +    +L   Y  +L   L +R  +  + +  L  AV  
Sbjct: 482  FAVTVTPMLCHDFLRVKAPTKEAKPSKLVTGYKAVLQWVLSHRVVSCAMLLGTLVAAVWG 541

Query: 544  AGRLEGEFFPASDRPELLVSLTLPRNASQQATEREVVRLEQSLKNDPDLDHFSTYVGSGA 603
            A  +   F P S RP+ +V + LP+ +  + TE+ V  +E+ +     + + ++++G G 
Sbjct: 542  AQFIPPGFMPESQRPQFVVDVYLPQGSDIRRTEQVVASIEKDVTQKDGITNITSFIGGGG 601

Query: 604  VRFYLPMDVLLQNENIAQLVVVAKGLKERDALRARLEKRLQQDFSHLVTRVSPLELGPPV 663
            +RF L      +N +  QL++      +   L   L+  L   +     +V    LG   
Sbjct: 602  LRFMLTYSPEARNPSYGQLLIDIDDYTKIAPLVGELQNELDAKYPDASIKVWKFMLGRGG 661

Query: 664  GWPLKYRVTGPDIDKVREYAAGLATLIGGNPDAREVNLTAGEPERAIRIDLNQTEARAVG 723
            G  ++    GPD   +R+ A     ++  +P+   V     +    ++   +  EA+ +G
Sbjct: 662  GKKIEAGFKGPDSHVLRQLAEQAKAIMHNDPNLIAVQDDWRQQVPVLQPVYSAQEAQRLG 721

Query: 724  ISSQDVASALATIFSGSVVTSVRDRNRMVGVVVRARDEERQNLDTVASLQLRAAN-GQRV 782
            +++Q++++A+A   +G  V   R+ N ++ ++VRA + ER +   + + ++ +A  G+ +
Sbjct: 722  LTTQEISAAIAQTLNGRNVGVYREGNDLIPLMVRAPENERHHERAIENSEVFSAQAGRYI 781

Query: 783  PLGQIA-SVGYGVDEPIIWRRQRLPFITVQTDLAPGVRAQTLSTTLAPQVAAYQAALPAG 841
            P+ Q+  SV     + ++ R  R+P I VQ D APGV        +  ++   Q  LPAG
Sbjct: 782  PVSQLVDSVDTVYQDALLRRINRMPTILVQADPAPGVMTADAFNNVREKIE--QIELPAG 839

Query: 842  YHIEEGGSAAESNKGNNSVYQVLPVTLLVMLILLMVQLQRFSRMMLALLMAPFGLIGVVA 901
            Y +   G    S   N  +    P     M++ ++       + ++  + APF ++GV  
Sbjct: 840  YELIWYGEYKASKDANEGLALSAPYGFAAMILAVVFMFNALRQPLVIWMTAPFAVVGVTI 899

Query: 902  AMLPTGTPMGFVALLGVIALAGMIIRNAVILISEVDTNTAAGMTTNEAIIHAARHRSRPI 961
             ++   TP  F+A+LG ++L GM+++NA++L+ + D    AG     AII AA  R+RP+
Sbjct: 900  GLIAFQTPFEFMAILGFLSLIGMMVKNAIVLVDQADAEIRAGKEAYFAIIDAAVSRARPV 959

Query: 962  LLTALAAILGMIPIATQVFWGPMAYAIIGGLIVATLLTLTVLP 1004
            LL A   ILG+ P+    F+  MA  I+ GL+ AT+LTL V+P
Sbjct: 960  LLGAFTTILGVAPLLVDPFFKSMAVTIMFGLLFATILTLVVIP 1002