Pairwise Alignments

Query, 1021 a.a., efflux RND transporter permease subunit from Dickeya dianthicola ME23

Subject, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  532 bits (1371), Expect = e-155
 Identities = 328/1011 (32%), Positives = 529/1011 (52%), Gaps = 15/1011 (1%)

Query: 11   LSAWALAHQQLVAFFMLVIVAAGVMSYERLPRNEDPAFTIKTAVVSASWPGATVQDTVSF 70
            ++A+ + ++ +     L+ +  G  ++  L R EDPAFTIK A+V  S+PGAT Q     
Sbjct: 22   VAAYFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEE 81

Query: 71   VTDVLEKKLQETPYLDFIESYSRPGEAVIFVNLRDSTPPSEVQGIWYAIRKKMKDIAPSL 130
            VT  LEK +Q+  Y+D + S S  G + I V ++++  P ++  IW  +R+K+ D+  +L
Sbjct: 82   VTYPLEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGAL 141

Query: 131  PDGVGEPAVNDEFDDTFGTIYGFTADGYSPRELRDRVDDIRTELLATPDVGKIDVLGVQD 190
            P GV  P V D+F D +G +   T +GYS +EL D VD +R EL     V K+ V G Q 
Sbjct: 142  PPGVNPPLVIDDFGDVYGILLAVTGEGYSYKELLDYVDYLRRELELIDGVSKVSVSGQQQ 201

Query: 191  EQIVAAFSPRQLAGMGLDLQQVTAALQAQNAVSPTGAIRTDNDKVALRVSGAFVSEESLR 250
            EQ+    S ++++ +G+  Q V   L  QN VS  GAIR  ++ + +  +G F   E L 
Sbjct: 202  EQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVEKLG 261

Query: 251  QVTLHIGGR--FIPLTDIATVYRQAAEPPAPAFRVNGQPAIGLAVSMAPTGNMLDFGQAL 308
             + L   G    I L D+A V R   E P+     NG+ A+ + VS A   N+++ GQ  
Sbjct: 262  DLILSERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVGQRF 321

Query: 309  RSKMATIGASLPHGIEVINVADQSSVVKSSVNGFVKVLLEAVVIVLAVSFVSLGSRAGLV 368
              ++A +    P GI++  V  Q   V  SV+GFV  L +AV IV+ V    +G R+GL+
Sbjct: 322  DRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGLRSGLL 381

Query: 369  VAASIPMVLTMTFTGMEIAGIGLQRISLGALIIALGLLVDDAMITVEAMVSSLEKGEARE 428
            +   + + +  TF  M+   I LQRISLGAL+IALG+LVD+A++ VE ++   +KG  R 
Sbjct: 382  IGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGILIGTQKGRTRL 441

Query: 429  QAATRAYDTTAFPMLTGTLVMVAGFIPVGFAASSAGEYCYSLFIVVLISLLSSWAVAVLF 488
            QAAT     T +P+L  T++ V  F P+G +  + GEYC +LF V+LISL+ SW  A+  
Sbjct: 442  QAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLISLMLSWFTAISL 501

Query: 489  SPLIGVWLL-----PKAMNAHDHHAGRLSRAYDRLLSTALRYRGRTLLLSVALLALAVVA 543
            +P            P +    D + G +   Y R L   +R    T+ + V  LA ++  
Sbjct: 502  TPFFADLFFRGQKAPASGEESDPYQGFIFVVYRRFLEFCMRRAWLTMGVLVLGLAASLYG 561

Query: 544  AGRLEGEFFPASDRPELLVSLTLPRNASQQATEREVVRLEQSLKNDPDLDHFSTYVGSGA 603
              +++  FFP+S  P  +V + +P     +AT+  ++ LE+ L     +D  +T  G G 
Sbjct: 562  FTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQESVDSVTTTAGKGL 621

Query: 604  VRFYLPMDVLLQNENIAQLVVVAKGLKERDALRARLEKRLQQDFSHLVTRVSPLELGPPV 663
             RF L            ++       ++  AL AR    L   +  +  ++  +ELGP  
Sbjct: 622  QRFMLTYSPEKSYAAYGEITTRVTDYQQLAALMARFRAHLDARYPQINYKLKQIELGPGG 681

Query: 664  GWPLKYRVTGPDIDKVREYAAGLATLIGGNPDAREVNLTAGEPERAIRIDLNQTEARAVG 723
            G  ++ R+ G D   +R  AA +  ++  +P A  +     E  + +    N+++AR  G
Sbjct: 682  GAKIEARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRERTKVLEPQFNESQARRYG 741

Query: 724  ISSQDVASALATIFSGSVVTSVRDRNRMVGVVVRARDEERQNLDTVASLQL-RAANGQRV 782
            I+  DV   LA  FSG  +   RD   ++ +V R  +EER ++  +  +++   A  + +
Sbjct: 742  ITKADVDEFLAMSFSGKTIGVYRDGTTLMPIVARLPEEERVDIRNIEGMKIWSPALSEYI 801

Query: 783  PLGQIASVGYGV--DEPIIWRRQRLPFITVQT--DLAPGVRAQTLSTTLAPQVAAYQAAL 838
            PL Q+ ++GY +  ++P+I R+ R   +TV    DL     A TL   L PQ+ A    L
Sbjct: 802  PLQQV-TLGYEMRWEDPLIVRKNRKRMLTVMADPDLLGEETAATLQQRLQPQIEA--IPL 858

Query: 839  PAGYHIEEGGSAAESNKGNNSVYQVLPVTLLVMLILLMVQLQRFSRMMLALLMAPFGLIG 898
            P GY +E GG    S     S+++ +P+  L M ++ +         ++  L  P  +IG
Sbjct: 859  PPGYFLEWGGEYESSGDAKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPLAVIG 918

Query: 899  VVAAMLPTGTPMGFVALLGVIALAGMIIRNAVILISEVDTNTAAGMTTNEAIIHAARHRS 958
            V   +L   TP GF+ALLG ++L+GM+++N ++L+ +++    +G     A++ A+  R 
Sbjct: 919  VTTGLLALNTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVVDASLSRV 978

Query: 959  RPILLTALAAILGMIPIATQVFWGPMAYAIIGGLIVATLLTLTVLPAAVSL 1009
            RP+ + A+  ILGMIP+   +F+ PMA  I+ GL  AT+LTL V+P    L
Sbjct: 979  RPVCMAAVTTILGMIPLLPDIFFRPMAVTIMFGLGFATVLTLIVVPVLYRL 1029