Pairwise Alignments

Query, 363 a.a., site-specific integrase from Dickeya dianthicola ME23

Subject, 335 a.a., Site-specific recombinase XerD from Pseudomonas stutzeri RCH2

 Score =  224 bits (570), Expect = 3e-63
 Identities = 131/342 (38%), Positives = 193/342 (56%), Gaps = 19/342 (5%)

Query: 1   MAVRKLASGKWLCECYPFGREGKRVRKQFATKGEALAFERFTMEE-SENKPWLGEKADNR 59
           MA+++L+ G+W  +  P   +GKR RK   TK EA+ FE     + SE+  W     D R
Sbjct: 7   MAIQQLSDGRWRVDVEPV--KGKRFRKTLKTKAEAMRFEATCRAKCSESNDWAPRPKDKR 64

Query: 60  SLREIIDLWFSLYGRTLADPKRMMAKLDIICTGLGNPKARELSAADFAHYRELRLAGQMT 119
            L E+++LWF L+G +L+D  R +A L      +G+P AR +  A  A  R   +     
Sbjct: 65  RLSELVELWFDLHGVSLSDGVRRVAILRACAKAMGDPIARMVDGAKIAATRARWM----- 119

Query: 120 DASGIPLSVVKPRTVNLEQRNLSAVFGTLKKLGHWDAPNPLSGLPTFKIAQQELAFLAPN 179
                 L+ V  +T N     L AV+  L KL   D P P + +   ++ ++ LA+L   
Sbjct: 120 ------LAGVTGKTANNRLGYLKAVYNELHKLDVIDYPCPFTRIRPVRLQERPLAYLTKP 173

Query: 180 EIKRVLDAC-AESANPHLLLVTKICLATGARWSEAEGLSGQQVTPYRITYTRTKGKKNRT 238
           +I  +LDA  A + +PH  +V +ICLATGARW EA+ L  +++    + +  TK K+ R 
Sbjct: 174 QISELLDALQARTTSPHPAMVARICLATGARWGEAQALRLERIRGNALVFANTKSKRVRM 233

Query: 239 VPISRELYDEIPRKSGKLFSP---CRKTFERAINRTGIQLPDGQCTHVLRHTFASHFMMN 295
           VP++ EL   I +K  + + P   C   F   +  T I+ P GQ +H+LRHTFA+HF+M 
Sbjct: 234 VPVTPELAAAI-KKHWQTYGPFTNCIGVFRLVLLSTSIKPPRGQASHILRHTFAAHFIMG 292

Query: 296 GGNILVLRDILGHADIKMTMIYAHFAPDHLEDAITKNPLNGL 337
           GG+I+ L++ILGHA + MTM YAH AP+HL DAI  +PL GL
Sbjct: 293 GGHIVTLKEILGHASLNMTMRYAHLAPEHLSDAIRLSPLGGL 334