Pairwise Alignments

Query, 299 a.a., site-specific tyrosine recombinase XerD from Dickeya dianthicola ME23

Subject, 311 a.a., site-specific tyrosine recombinase XerD from Sinorhizobium meliloti 1021

 Score =  226 bits (577), Expect = 4e-64
 Identities = 139/313 (44%), Positives = 178/313 (56%), Gaps = 23/313 (7%)

Query: 1   MQKQDQALIEQFLDALWLERNLAENTLSSYRNDLRSLADWLAHHECSLLQAQPSDLQDFL 60
           M     A +E FL+ +  ER  A NTL SY  DL     +L      L  A   DL+ +L
Sbjct: 1   MTDMSAAYVEAFLEMMSAERGAAANTLQSYERDLEDARSFLRSRGTGLTDASADDLRSYL 60

Query: 61  AERLEGGYKATSSARLLSAMRRLFQYLYREKQRTDDPSAPLSSPKLPQRLPKDLTEAQVD 120
           +     G+KA+S AR LSA+R+ +++LY E  RTDDP+  L +PK  + LPK L+   V 
Sbjct: 61  SHLAGQGFKASSQARRLSALRQFYKFLYAEGLRTDDPTGILDAPKKARTLPKTLSIEDVT 120

Query: 121 ALLAAPVT-------DQPIELRDKAMLELLYATGLRVSELVGLTISDVSLRQGVVRVIGK 173
            L+            D   +LR  A++ELLYATG+RVSELV L  S ++     + + GK
Sbjct: 121 RLIGQAEAEAKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLIIRGK 180

Query: 174 GNKERLVPLGEEAVYWLEQYLEYSR------PWLLNGQTLDVLFPSN-RAQQMTRQTFWH 226
           GNKERLVPL + A+  +  Y E  +      PWL         FPSN ++  + RQ F  
Sbjct: 181 GNKERLVPLSQAAIRAMRAYGEALQEESADSPWL---------FPSNGKSGHLPRQVFAR 231

Query: 227 RIKHYATLASIDSNKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATE 286
            +K  A  A I    +SPHVLRHAFA+HLL +GADLR VQ LLGHSD+STTQIYTHV  E
Sbjct: 232 DLKSLAARAGIRVAAISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEE 291

Query: 287 RLRLLHQQHHPRA 299
           RL  L Q HHP A
Sbjct: 292 RLHDLVQNHHPLA 304