Pairwise Alignments

Query, 544 a.a., SAM-dependent DNA methyltransferase from Dickeya dianthicola ME23

Subject, 517 a.a., Type I restriction enzyme EcoR124II M protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  136 bits (342), Expect = 2e-36
 Identities = 129/491 (26%), Positives = 221/491 (45%), Gaps = 31/491 (6%)

Query: 31  NEFKIITQAFL-YKFLNDKFAYEAKKV--DKTVANAERWEEALSQMSEAQLDKLQLRMNA 87
           ++F   T  F+ YK+L++K    A     D  +   E WE   +   E Q +     +  
Sbjct: 27  SDFMYFTLGFIFYKYLSEKIEKYANNALADDDITFKELWETDDADAIELQEEAKNQCLEN 86

Query: 88  DTARLKPRHFITHLFNQ-QNKSDFAKTFDDTLMDIAETNNEVFAVKTDGGAKVVLFDRLS 146
               ++P+   + +    + K +     + +L  I ++     +    GG    +     
Sbjct: 87  IGYFIEPQFLFSSVIEAIKRKENILPMLERSLKRIEDSTLGQDSEDDFGGLFSDIDLASP 146

Query: 147 EFIADSSKRNDFCRAIINKLMEFSFERIFTQKFDFYATIFEYLIKDYNSNAGGKYAEYYT 206
           +    +  +N     ++  L + +F    +Q+ D     +EY+I  + + AG K  E+YT
Sbjct: 147 KLGKTADDKNTLVSNVLLALDDINFGLEASQEIDILGDAYEYMISQFAAGAGKKAGEFYT 206

Query: 207 PHAVARIMAAILVPEAQRGTVRNVTCYDPSAGSGTLLMNVAHAIGEDRCSIFTQDISQKS 266
           P  V+RI+A I+    QR  +RNV  YDP+ GSG+LL+  A +IG +   I+ Q+ +  +
Sbjct: 207 PQEVSRILAEIVAIGHQR--LRNV--YDPTCGSGSLLLRAA-SIG-NAVDIYGQEKNPTT 260

Query: 267 SSLLRLNLILNNLVHSIPYVIQGNTILHPYHKDGQDLKRFDYIVSNPPFKMDFSDFRNAL 326
            +L R+N++L+ +  S   +  G+T+      D Q    FD +V+NPPF  ++S    A 
Sbjct: 261 YNLARMNMLLHGIRFSNFKIENGDTLEWDAFGDTQ----FDAVVANPPFSAEWS----AA 312

Query: 327 DTKENQPRFFAGIPNIPKSAKDKMAIYQLFLQHIIYSLKPGGKAAVVVPTGFITAQSGID 386
           D      RF       P+   D       F+ H+IY L  GG  A V P G +  +   +
Sbjct: 313 DKFNTDDRFSKAGRLAPRKTAD-----YAFILHMIYHLNEGGTMACVAPHG-VLFRGNAE 366

Query: 387 KAIREHLV-KNRMLAGVVSMPSNIFATTGTNVSILFIDAGNKE--KVVLIDASGLGEKVK 443
             IR  L+ K   +  ++ +P+NIF  T     IL      KE   ++ IDAS   EKVK
Sbjct: 367 GVIRRFLIEKKNYVDAIIGLPANIFYGTSIPTCILVFKKCRKEDDNILFIDASKEFEKVK 426

Query: 444 DGKNQKTVLTPEEEQRICEVFTNQWNEEDFSVVVSYDEIAAKNYSFSAGQYFEVRIEYSD 503
                +  L  +  Q+I E + ++   E +S + S  EIA  +Y+ +  +Y +   E   
Sbjct: 427 ----TQNKLREQHIQKIVETYRDRKEIEKYSHLASLQEIAENDYNLNIPRYVDTFEEEEP 482

Query: 504 ITPAQFAAKMK 514
           I      A++K
Sbjct: 483 IDIKAVMAEIK 493