Pairwise Alignments

Query, 628 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Dickeya dianthicola ME23

Subject, 556 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  462 bits (1189), Expect = e-134
 Identities = 265/561 (47%), Positives = 358/561 (63%), Gaps = 26/561 (4%)

Query: 8   FASLGLSAPILSALSELGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNN 67
           FA+LG+ + +L+A+S +GYE+PSPIQ++ IP +L G D++G AQTG+GKTAAF+LP+L+ 
Sbjct: 8   FAALGIHSAVLAAISAVGYEEPSPIQSQAIPVILGGHDMIGQAQTGTGKTAAFALPILSK 67

Query: 68  IKAELKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLRALRQGPQ 127
           I    K  Q L+LAPTRELA+QVA A   +SK M G+ VVA+YGG     QL+A+RQG Q
Sbjct: 68  IDPARKEVQALILAPTRELALQVATAFETYSKQMPGLTVVAVYGGAPMGPQLKAIRQGAQ 127

Query: 128 IVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTALFS 187
           ++V TPGRL+DHL R +  LS +  LVLDEADEML++GF++D+E I   +P   QT LFS
Sbjct: 128 VIVATPGRLVDHLSRNSGLLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQTVLFS 187

Query: 188 ATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFLEAEDFDA 247
           AT+P +IR I  + +++PQ ++I +   T   I Q++  V+  +K +A++R LE EDFDA
Sbjct: 188 ATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLLEVEDFDA 247

Query: 248 AIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307
            I FVRTK ATL++A ALE  GY +AALNGD+ Q  RE+ +E LKDGRLDI++ATDVAAR
Sbjct: 248 LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAAR 307

Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367
           GLDV RI+ V N D+P D ESYVHRIGRTGRAGR GRALL V  RERR+L+ IER     
Sbjct: 308 GLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTNQK 367

Query: 368 IPEVDLPNAELLGQRRLAQFAAKVQQQLESSDLDMYRALLGKLRPQEELDIETLAAALLK 427
           + E  LPNA+ +   R+ +    +   +  ++   +  LL KL          LAAALL+
Sbjct: 368 VAEARLPNAQQVLDARIKKLTNSLAPLVADAEA-THGELLDKLVADIGCSPRALAAALLR 426

Query: 428 ---------MAQGERPLVLPPESAAERRPRREFRERDERFERRGDRNERAPRSSDERPAR 478
                    +A+ ER   L P S+      RE  ER +R ER GDR  RAP    E  AR
Sbjct: 427 KATNGQALTLAEVEREQPLVPTSSP-----RERTERSDRPERSGDRERRAPVPLAEGRAR 481

Query: 479 RERRDVGEMDLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 538
                       R  +G  DG+  R+++GAI NEG ++   IG I++  S S +ELP+  
Sbjct: 482 -----------CRTPLGARDGIAARNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDG 530

Query: 539 PGDLLSHFTRTRILNKPMNMQ 559
              LL     TR+  K + ++
Sbjct: 531 LERLLGKLKDTRVGGKQLKLR 551