Pairwise Alignments

Query, 496 a.a., transcription termination/antitermination protein NusA from Dickeya dianthicola ME23

Subject, 491 a.a., transcription termination factor NusA from Burkholderia phytofirmans PsJN

 Score =  471 bits (1211), Expect = e-137
 Identities = 244/494 (49%), Positives = 353/494 (71%), Gaps = 7/494 (1%)

Query: 1   MNKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFR 60
           M++E+L +V+A++ EK V ++ +F ALE ALA+A+KK +E++ D+RV IDR++G+ +TFR
Sbjct: 1   MSREVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVQIDRESGEHETFR 60

Query: 61  RWLVVNE---VTQPTREITLEAAQFEEPSMDLGGYIEDQIESVTFDRITTQTAKQVIVQK 117
           RW VV +   + +P +EI L  A+ ++P + L  +IE+ + S+ F RI  Q AKQVI+QK
Sbjct: 61  RWKVVPDEAGLQEPDQEILLFEAREQKPEIQLDEFIEEPVPSIEFGRIGAQAAKQVILQK 120

Query: 118 VREAERAMVVDQFREQEGEIVTGVVKKVNRDNISLDLGSNAEAVIGREDMLPRENFRPGD 177
           VR+AER  +++ F E+   I+TG VK++++ N  ++ G   EA++ R+ ++P+EN R GD
Sbjct: 121 VRDAEREQILNDFLERGEHIMTGSVKRLDKGNFIVETG-RVEALLRRDQLIPKENLRVGD 179

Query: 178 RIRGVLYAVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237
           R+R  +  V   ARG Q+ +SR+ PE L++LF +EVPEI + ++EIKAAARDPG RAKI 
Sbjct: 180 RVRAYIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIG 239

Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297
           V   DKRIDP+G CVG+RG+RVQAV +ELGGE +DIVLW ++PAQFVI A+APA V SIV
Sbjct: 240 VVAYDKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIV 299

Query: 298 VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTIEDLQAKHQAEAHAAID 357
           VDE+KH+MD+ V+   LA AIGR+GQNVRLAS+L+GW++N+MT ++   K   E     D
Sbjct: 300 VDEEKHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRD 359

Query: 358 IFTKHLDIDEEFATALVEEGFSSLEELAYVPIHELQDIDGLDEETIEALRERAKAALTTL 417
           +F   LD+DEE A  L++EGF+SLEE+AYVP++E+ +I+  DE+T+  LR R++ AL T 
Sbjct: 360 LFMARLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTQ 419

Query: 418 ALANEENRGSGQPAEDLLNLSGLSRELAFKLAACGVCTLEDLAEQGVDDLADIEGLGEEQ 477
           A+ANEE       A DL +L G+  +L  KLA   + T ++LAE  VD+L ++ G+ E+ 
Sbjct: 420 AIANEEK--VENVALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMTGMEEDA 477

Query: 478 AGELIMAARNICWF 491
           A  LIM AR   WF
Sbjct: 478 AKALIMKARE-HWF 490