Pairwise Alignments

Query, 520 a.a., sugar ABC transporter ATP-binding protein from Dickeya dianthicola ME23

Subject, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

 Score =  391 bits (1005), Expect = e-113
 Identities = 217/500 (43%), Positives = 320/500 (64%), Gaps = 15/500 (3%)

Query: 21  EVIIETRSLSRVYPGVTALDQVNYRVYRNKVNVLIGENGAGKSTMMKMLAGVETPSSGQI 80
           + I+    + + +PGV ALD+ +  VY  +V  L+GENGAGKST+MK+L G+ +  +G I
Sbjct: 3   QAILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSI 62

Query: 81  LLDGKPVTLGSTQQAERQGISIIFQELNLFPNMTVMDNIFIANEF---FQRGVINEKFQY 137
              G+PV+    + ++  GISII QELNL P +T+ +NIF+  E    F R + +E   +
Sbjct: 63  EYQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDE--MH 120

Query: 138 ALAKTLLERLELDIDPYTPLGELGIGHQQLVEIARALSKDTRVLIMDEPTSALSQSEVKV 197
             A  LL RL +     T LGEL +G QQ+VEIA+ALS +++V+IMDEPT AL+ +E + 
Sbjct: 121 RKADQLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETES 180

Query: 198 LFGVIAQLKRRGVTIIYISHRLEELMAIGDHITIFRDGRCICEREVRHASVPWIIEQMVG 257
           LF VI +L+ +G  I+YISHRL+E+  I D IT+ RDG+ I E  V   +   +IE MVG
Sbjct: 181 LFNVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVG 240

Query: 258 DK-KKHFDYQPAPQGDTVLTVAGLTALHQSGGYRLHDVSFSLRKGEVVGIYGLLGAGRTE 316
            K ++ +    A QGD  L V GLT      G  +HDVSF+L+KGE++G+ GL+GAGRTE
Sbjct: 241 RKLEEQYPRIAAQQGDISLEVIGLT------GSGVHDVSFTLKKGEILGVSGLMGAGRTE 294

Query: 317 LFKGLIGLMPCRQGSVQLNDDCLDGLGFRQRLEKGIALVPEDRQGEGLVQLMSVRANMTL 376
           L K + G +P  +G + LN   ++ +  +  L  GIA + EDR+G+GLV  +SV+ NM+L
Sbjct: 295 LMKVIYGALPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSL 354

Query: 377 SSLSLRGFWRAWSWLREPDEARQVDEMVRQLAVKVSDGELPVTSLSGGNQQKVVLGKALM 436
            +L           +R  DE   VD+ +R   +K    E  + +LSGGNQQKV + K LM
Sbjct: 355 CALDQLS---KGVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLM 411

Query: 437 TRPQVVLLDEPTRGIDVGAKTDVYHLIGRMAQQGLSVMFSSSELDEVMALADRILVMADG 496
           T+P+V++LDEPTRG+DVGAK ++Y LI +   +G+S++  SSE+ EV+ ++DRILVM +G
Sbjct: 412 TKPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEG 471

Query: 497 RITADLPRSQVTREILISAS 516
           RI+ +   S+  +E L++ +
Sbjct: 472 RISGEFMASEADQEKLMACA 491



 Score = 80.1 bits (196), Expect = 2e-19
 Identities = 68/257 (26%), Positives = 119/257 (46%), Gaps = 14/257 (5%)

Query: 17  ETAPEVIIETRSLSRVYPGVTA--LDQVNYRVYRNKVNVLIGENGAGKSTMMKMLAGVET 74
           E  P +  +   +S    G+T   +  V++ + + ++  + G  GAG++ +MK++ G   
Sbjct: 245 EQYPRIAAQQGDISLEVIGLTGSGVHDVSFTLKKGEILGVSGLMGAGRTELMKVIYGALP 304

Query: 75  PSSGQILLDGKPVTLGSTQQAERQGISIIFQELN---LFPNMTVMDNIFI-ANEFFQRGV 130
              G I L+G+ V   S Q     GI+ I ++     L   ++V +N+ + A +   +GV
Sbjct: 305 SERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALDQLSKGV 364

Query: 131 INEKFQYALAKTLLERLELDIDPYTP-----LGELGIGHQQLVEIARALSKDTRVLIMDE 185
                   +A     RL    +  TP     +G L  G+QQ V IA+ L    +VLI+DE
Sbjct: 365 QIRHADEVIAVDDFIRL---FNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILDE 421

Query: 186 PTSALSQSEVKVLFGVIAQLKRRGVTIIYISHRLEELMAIGDHITIFRDGRCICEREVRH 245
           PT  +     K ++ +I Q K  G++II +S  + E++ + D I +  +GR   E     
Sbjct: 422 PTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASE 481

Query: 246 ASVPWIIEQMVGDKKKH 262
           A    ++   VG    H
Sbjct: 482 ADQEKLMACAVGRNPAH 498