Pairwise Alignments

Query, 372 a.a., LPS export ABC transporter permease LptF from Dickeya dianthicola ME23

Subject, 394 a.a., conserved hypothetical protein YCF84 from Synechococcus elongatus PCC 7942

 Score = 55.8 bits (133), Expect = 2e-12
 Identities = 80/378 (21%), Positives = 152/378 (40%), Gaps = 52/378 (13%)

Query: 2   IIIRYLVRETFKSQV----AILFILLLIFFCQKLVRILGAAVDGDIPTNLVLSLLGLGVP 57
           I+ RY++RE     +    A   + L I    +LVR      +  +P ++   +  L +P
Sbjct: 29  IMDRYILREMLGPFLFGVGAFTSVGLSIGVVFELVR---QVTEAGLPLSVAAQVFLLKMP 85

Query: 58  AMAQLILPLSLFLGLLMTFGRLYAESEITVMHACGLSKSVLLKAALLLSLLTASLAAANV 117
               L  P+S+ L  LM + RL ++SE+  + +CG+S    +   +L+S++   +  A  
Sbjct: 86  DFLVLAFPMSMLLSALMAYNRLSSDSELIALRSCGISSYRFILPGILMSIVVTGMTFAFY 145

Query: 118 LWLSPWSSRHQDEVLAEARANPGMASLAEGQFQQTQDGNSVLFVGKVNGGDFERIFLAQL 177
             + P ++  Q +V  +   N     L E         N V         +  RIF A+ 
Sbjct: 146 ESVVP-AANFQAQVTLQTALNQTRPQLEE-------KNNIVYQQFDRKTSELARIFYARR 197

Query: 178 HPRENTRPSVVVADRGTVAARGDGSQVVTLNKGTRYEGTAMLRDFR-------------- 223
           +  E  R   ++        RG+ SQ+++   G  + G   L +FR              
Sbjct: 198 YDGEQMRGLTILD-----FTRGELSQIISAETGVWHPGD-QLWEFRNGTIYGVAPDGSYS 251

Query: 224 -ITDFINYQAIVGYQPIAVDPSNVE--QMSLETLWQ----------SADIAARAEFHWRL 270
            I  F + +  +   P+++   + +  QM+   +WQ          +ADI  + E   + 
Sbjct: 252 GIATFKSQEFTIPETPLSIASQSRDETQMNATQIWQYLRVLRQTNNTADI-RKWEVRLQQ 310

Query: 271 TLILSVLVMAVMVVPLSV---VNPRQGRVLSMLPAMLLYLVFFLLQSSLRSNASKGKLDP 327
            L L  + +A  ++  S+    N R GR      ++L+   ++LL     +    G L  
Sbjct: 311 KLALPFVCVAFGLIGASLGTAPNQRTGRATGFGISVLIIFSYYLLAFVTGALGINGTLPT 370

Query: 328 MVWMWLTNLAYLALAIIL 345
           ++  W   L  + + + L
Sbjct: 371 LLAGWFPWLLGMGVGLYL 388