Pairwise Alignments

Query, 632 a.a., ABC transporter ATP-binding protein from Dickeya dianthicola ME23

Subject, 556 a.a., ABC transporter for D-Raffinose, ATPase component (from data) from Sinorhizobium meliloti 1021

 Score =  460 bits (1184), Expect = e-134
 Identities = 261/560 (46%), Positives = 357/560 (63%), Gaps = 41/560 (7%)

Query: 20  QPVLEIDDLSVSFSGRSGTHLALKGVSFSLNKGEVVAVVGESGSGKSVTSLTVMGLL--- 76
           +PV++   ++VSF   +GT  A+K VSF L +GE VA+VGESGSGKSVT+ TVMGLL   
Sbjct: 23  RPVIDARKVAVSFKVENGTVQAVKDVSFQLYRGETVAIVGESGSGKSVTARTVMGLLSKR 82

Query: 77  ---AASARIERGGIRFIDNAGRRHDLLTMKDDARRRLRGRDMAMIFQEPMTSLNPVLKVG 133
              A  ARIE  G           D+L      RR LRG  ++MIFQEPM+SLNPV  +G
Sbjct: 83  ATIAPQARIEYDG----------RDVLKFSKRERRALRGDRISMIFQEPMSSLNPVYTIG 132

Query: 134 DQLTEALLDHQMCDAASAERKARELLRKVRIADIDRVMNSYPHSLSGGMRQRVMIAQALA 193
            Q+ EA+  H+     +A  +A ELLR V+I D +  +N YPH LSGG RQRVMIA ALA
Sbjct: 133 SQIIEAIRAHRRVSRRAAAERALELLRHVQIPDPEARLNQYPHQLSGGQRQRVMIAMALA 192

Query: 194 CDPQLLIADEPTTALDVTVQARILQILRDLQRQSNMSVLFITHDMGVVAEIADRVVVMYR 253
            DP +LIADEPTTALDVTVQA+IL ++R LQ++  M+V+ ITHD+ VV + +D V VM  
Sbjct: 193 NDPDVLIADEPTTALDVTVQAQILNLIRKLQQELGMAVILITHDLTVVRQFSDYVYVMQL 252

Query: 254 GEVVEQGTVDAIFNRPQHDYTKALLAAVPRLGDMRDSAWPKRFPLLGQQNAAPEQDHTTA 313
           GEV E  T +A+F  PQH YT+ LL++ P                 G  N  P+      
Sbjct: 253 GEVKEHNTTEALFADPQHAYTRRLLSSEPS----------------GSANPLPD------ 290

Query: 314 RYDAPPLLDIRGLKVYYPIRSG-ILSSVTHRVHAVEQIDFTVWPGETLAIVGESGCGKST 372
             DAP LLD R ++V + ++ G         + AV+ +   +   ETL +VGESG GK+T
Sbjct: 291 --DAPILLDGRNVRVSFTLKKGGFFRPEFKELVAVDGLSLNLRRHETLGLVGESGSGKTT 348

Query: 373 TGRALLRLVESQSDSLLFDGQEIAGLRDRDFQPLRRKMQMVFQDPYASLNPRLTVGFTIA 432
            G+AL+RL+ +    + F+G+ I     +  +PLR K+Q+VFQDP++SLNPR++VG  I 
Sbjct: 349 FGQALIRLLNTDGGEIYFEGEPIHDKDRKGMRPLRSKIQIVFQDPFSSLNPRMSVGQIIE 408

Query: 433 EPLLLHGLAKSLEDATPQVQALLKSVGLLPEHAQRYPHEFSGGQRQRIAIARAMALQPQV 492
           E L+++G+ ++ +D   +V+  L S G+      R+PHEFSGGQRQRIAIARA+AL+P+ 
Sbjct: 409 EGLIVNGMGENRKDRLKRVEDALVSAGMPSNILSRFPHEFSGGQRQRIAIARAVALEPEF 468

Query: 493 IIADEAVSALDVSIQAQVVNLMMDLQQKTGVSWIFISHDMAVVERIANRVAVMYLGQIVE 552
           I+ DE  SALD+S+QAQ++ L+  LQ + G+S++ ISHD+ VV  + +RV VM  G+IVE
Sbjct: 469 ILLDEPTSALDLSVQAQIIELLRRLQDERGLSYLVISHDLKVVRALCHRVVVMQDGKIVE 528

Query: 553 IGPRQSVFNNPQHPYTRRLL 572
            GP   V NNP+  YT RL+
Sbjct: 529 EGPVSEVLNNPKTAYTERLV 548



 Score =  192 bits (488), Expect = 3e-53
 Identities = 111/285 (38%), Positives = 172/285 (60%), Gaps = 16/285 (5%)

Query: 305 APEQDHTTARYDAPPLLDIRGLKVYYPIRSGILSSVTHRVHAVEQIDFTVWPGETLAIVG 364
           APE+       D  P++D R + V + + +G        V AV+ + F ++ GET+AIVG
Sbjct: 10  APEERRDRDMKDERPVIDARKVAVSFKVENGT-------VQAVKDVSFQLYRGETVAIVG 62

Query: 365 ESGCGKSTTGRALLRLVESQSD-----SLLFDGQEIAGLRDRDFQPLRR-KMQMVFQDPY 418
           ESG GKS T R ++ L+  ++       + +DG+++     R+ + LR  ++ M+FQ+P 
Sbjct: 63  ESGSGKSVTARTVMGLLSKRATIAPQARIEYDGRDVLKFSKRERRALRGDRISMIFQEPM 122

Query: 419 ASLNPRLTVGFTIAEPLLLHGLAKSLEDATPQVQALLKSVGLLPEHAQ--RYPHEFSGGQ 476
           +SLNP  T+G  I E +  H    S   A  +   LL+ V +    A+  +YPH+ SGGQ
Sbjct: 123 SSLNPVYTIGSQIIEAIRAHRRV-SRRAAAERALELLRHVQIPDPEARLNQYPHQLSGGQ 181

Query: 477 RQRIAIARAMALQPQVIIADEAVSALDVSIQAQVVNLMMDLQQKTGVSWIFISHDMAVVE 536
           RQR+ IA A+A  P V+IADE  +ALDV++QAQ++NL+  LQQ+ G++ I I+HD+ VV 
Sbjct: 182 RQRVMIAMALANDPDVLIADEPTTALDVTVQAQILNLIRKLQQELGMAVILITHDLTVVR 241

Query: 537 RIANRVAVMYLGQIVEIGPRQSVFNNPQHPYTRRLLASVPIADPN 581
           + ++ V VM LG++ E    +++F +PQH YTRRLL+S P    N
Sbjct: 242 QFSDYVYVMQLGEVKEHNTTEALFADPQHAYTRRLLSSEPSGSAN 286



 Score =  149 bits (375), Expect = 4e-40
 Identities = 92/246 (37%), Positives = 146/246 (59%), Gaps = 21/246 (8%)

Query: 40  LALKGVSFSLNKGEVVAVVGESGSGKSVTSLTVMGLLAASARIERGGIRFIDNAGRRHDL 99
           +A+ G+S +L + E + +VGESGSGK+     ++ LL      + G I F       HD 
Sbjct: 321 VAVDGLSLNLRRHETLGLVGESGSGKTTFGQALIRLL----NTDGGEIYF--EGEPIHD- 373

Query: 100 LTMKDDARRRLRGRDMAMIFQEPMTSLNPVLKVGDQLTEALLDHQMCDAASAERKARELL 159
              KD    R     + ++FQ+P +SLNP + VG  + E L+ + M +     RK R  L
Sbjct: 374 ---KDRKGMRPLRSKIQIVFQDPFSSLNPRMSVGQIIEEGLIVNGMGE----NRKDR--L 424

Query: 160 RKVRIADID-----RVMNSYPHSLSGGMRQRVMIAQALACDPQLLIADEPTTALDVTVQA 214
           ++V  A +       +++ +PH  SGG RQR+ IA+A+A +P+ ++ DEPT+ALD++VQA
Sbjct: 425 KRVEDALVSAGMPSNILSRFPHEFSGGQRQRIAIARAVALEPEFILLDEPTSALDLSVQA 484

Query: 215 RILQILRDLQRQSNMSVLFITHDMGVVAEIADRVVVMYRGEVVEQGTVDAIFNRPQHDYT 274
           +I+++LR LQ +  +S L I+HD+ VV  +  RVVVM  G++VE+G V  + N P+  YT
Sbjct: 485 QIIELLRRLQDERGLSYLVISHDLKVVRALCHRVVVMQDGKIVEEGPVSEVLNNPKTAYT 544

Query: 275 KALLAA 280
           + L+ A
Sbjct: 545 ERLVKA 550