Pairwise Alignments
Query, 1049 a.a., ribonuclease E from Dickeya dianthicola 67-19
Subject, 1128 a.a., ribonuclease (RefSeq) from Shewanella loihica PV-4
Score = 885 bits (2288), Expect = 0.0
Identities = 547/1101 (49%), Positives = 667/1101 (60%), Gaps = 85/1101 (7%)
Query: 1 MKRMLINATQQEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60
MKRMLINATQ EELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITR+EPSLEAAFVDY
Sbjct: 1 MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY 60
Query: 61 GAERHGFLPLKEIAREYFPSSYNAHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI 120
GAERHGFLPLKEIAREYFP Y+ GRPNIK+V++EGQEVIVQ+DKEERGNKGAALTTFI
Sbjct: 61 GAERHGFLPLKEIAREYFPKGYSFQGRPNIKEVVKEGQEVIVQIDKEERGNKGAALTTFI 120
Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALGSLELPDGMGLIVRTAGVGKSADAL 180
SLAGSYLVLMPNNPRAGGISRRIEGD+RTELK A+ LE+P GMGLIVRTAGVGK A L
Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDERTELKAAMSELEVPQGMGLIVRTAGVGKDAAEL 180
Query: 181 QWDLAFRLKHWEAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILELA 240
+WDL HW AI++AA+ R APFLIHQESNVIVRA RDYLR D+GE+LID+ +I E A
Sbjct: 181 KWDLKVLQHHWAAIEEAAQNRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHQRIYEQA 240
Query: 241 KEHIAALGRPDFGSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT 300
K+H+ AL RPDF +IK Y E+PLF+H+QIE+QIESAFQREVRLPSGGSIVID TEALT
Sbjct: 241 KQHV-ALVRPDFVDRIKRYEAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALT 299
Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE 360
+IDINSARAT+GGDIEETA NTNLEAADEIARQLRLRDLGGL+VIDFIDMTPVRHQREVE
Sbjct: 300 SIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVE 359
Query: 361 NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS 420
NR+RDAV DRAR+Q+GRISRFGL+EMSRQRL PSL ES+ H+CPRC G GTIR ESL+
Sbjct: 360 NRMRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLA 419
Query: 421 LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKREAVNAIEKRQGDVRAIIVPHDGME 480
LSILRL+EEEA+KENT ++ AIVPV +A++LLNEKR+A+ E+R DV ++P M
Sbjct: 420 LSILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRH-DVEVYVIPDPNMT 478
Query: 481 TPHYSVLRVRKGEEKQTLSYMLPQLLDVESQPSLEEQTPERRVPEQPALASF-TMSDIPP 539
TP Y V R RK ++ SY +LL+ E + ER +PAL F T P
Sbjct: 479 TPDYRVTRHRKDDQISESSY---KLLEQPESKLYEPRKLERAASPEPALKGFSTPVKDAP 535
Query: 540 AETKPAPVVTAPKAEKQPSSSERGLFGRFVGALKGIFAAPADVKEKPAETV--EATSDEQ 597
+ PAP A KA+ E GL + A+ +F E+P E V E
Sbjct: 536 TQAAPAPAKPAEKAQ------EPGLIAKLFAAIGKLFGGE---PEQPKEEVKKEQPRRNA 586
Query: 598 EQKQERRNNRRQSGRRERPR-----------------DNREPRERDE--QRRNKRTQPQN 638
+ + RRNNRR R+ R D+R + R+E Q+R++ +PQ+
Sbjct: 587 QNRNSRRNNRRNDTRKSRDEGKETDNKRSRSAKPDDADSRSAKSRNEKRQKRDRDDKPQS 646
Query: 639 ADVETAPVAEAPAQDKAVRDEQRREQRAERQRRRQEEKRQAQDDVKELNAVTEAADTEDA 698
+T A+ P Q+ A QRR R R+ R Q E++ A + + +A D +
Sbjct: 647 QSKDTESQAQQPKQEAARERRQRRNMR--RKVRVQSEQQLADEAALAIEVAEKANDEQVQ 704
Query: 699 VAEQEKPAQVMQRRQRRQLTQKVRVQD-SDATGENTEAQLPA-------APYVQQSVVEV 750
V E A +RQ+RQ + QD +D E T+A+ A P V+
Sbjct: 705 VPAAEATADDKPQRQKRQPRKSKPKQDKADKLEEETQAEQVADEDTASEQPAVETQAANE 764
Query: 751 PEPAALAAEVTNTENDAVESNRENGLP---------------RRSRRSPRHLRVSGQRRR 795
P+ + +V D ++ + P RRSRRSPRHLR +GQRRR
Sbjct: 765 PKDTEVTTQV-EAHADEAQAEEASAQPQEGESEGKREPREGQRRSRRSPRHLRAAGQRRR 823
Query: 796 RYRD------ERYPAQSPMPMTQASASPEMASGKVWIRYPVAQQQQPERVEEPVSEFIDA 849
R + PA P + A E + + V++ Q +E V +
Sbjct: 824 RDEEGNGEVNNGEPAFIPNEVETAPLLGEQLEQEGSVVEAVSEVQATATEQEAVKQ---- 879
Query: 850 PLSAAPELTAVAVATLPEAVDVLDTAPVSAPA-TPLSTPTQQETVPTEVPQHLDANV-QE 907
A E+T VA T+ E T APA +Q+E+ P + A V E
Sbjct: 880 ---EADEVTTVAETTVTETTVTETTVAEEAPAKAAAEEASQEESKPKPRRRAPKAKVASE 936
Query: 908 EIAQPQETQQLAPQFAETTA-LVEEAPAEV-VVADSDATTRSEPAETQPTEQPQVVHEPV 965
E +E QQ P E A L EE AE+ + + + S+ A Q + EP
Sbjct: 937 EETSVEEAQQSLPLAGEAKASLKEEVQAELDLTSTPEEVKASQEAAPQAEDVAAQAEEPA 996
Query: 966 LVENTPATQEPVAAVSAPAEISAVVPSQHYAAAPMTRAPAPAYVPDAPRVSDWQRPAFAF 1025
VE P + P A E A S A+APM + PA VP AP
Sbjct: 997 AVETAP-VETPEVETEAKTEAPAAKESS-AASAPMAK---PAAVP-APTAKVKPAAKVEA 1050
Query: 1026 SGKGSAGGHAAEDQASAPATR 1046
+ A D+A PA +
Sbjct: 1051 TPAEDKPEETASDEAEKPAPK 1071
Score = 60.5 bits (145), Expect = 7e-13
Identities = 98/438 (22%), Positives = 168/438 (38%), Gaps = 82/438 (18%)
Query: 577 AAPADVKEKPAETVEATSDEQEQKQERRNNRRQSGRRERPRDNREPRERDEQRRNKRTQP 636
A A+ ++ EAT+D++ Q+Q+R+ R+S ++ D E + EQ ++ T
Sbjct: 695 AEKANDEQVQVPAAEATADDKPQRQKRQP--RKSKPKQDKADKLEEETQAEQVADEDTAS 752
Query: 637 QNADVET---------------------APVAEAPAQD--------KAVRDEQRREQRAE 667
+ VET A EA AQ + R+ QRR +R+
Sbjct: 753 EQPAVETQAANEPKDTEVTTQVEAHADEAQAEEASAQPQEGESEGKREPREGQRRSRRSP 812
Query: 668 R------QRRRQEEKRQAQDDVKELNAVTEAADTEDAVAEQ-EKPAQVMQRRQRRQLT-- 718
R QRRR++E+ + + E + +T + EQ E+ V++ Q T
Sbjct: 813 RHLRAAGQRRRRDEEGNGEVNNGEPAFIPNEVETAPLLGEQLEQEGSVVEAVSEVQATAT 872
Query: 719 -QKVRVQDSDATGENTEAQLPAAPYVQQSVVEVPEPAALAAEVTNTENDAVESNRENGLP 777
Q+ Q++D E + + +V E PA AAE E+++E P
Sbjct: 873 EQEAVKQEADEVTTVAETTVTETTVTETTVAE-EAPAKAAAE---------EASQEESKP 922
Query: 778 RRSRRSPR----------------HLRVSGQRRRRYRDERYPAQSPMPMT----QASASP 817
+ RR+P+ L ++G+ + ++E Q+ + +T + AS
Sbjct: 923 KPRRRAPKAKVASEEETSVEEAQQSLPLAGEAKASLKEE---VQAELDLTSTPEEVKASQ 979
Query: 818 EMASGKVWIRYPVAQQQQPERVEEPVSEFIDAPLSAAPELTAVAVATLPEAVDVLDTAPV 877
E A + AQ ++P VE E + A E A ++ A + A V
Sbjct: 980 EAAPQAEDV---AAQAEEPAAVETAPVETPEVETEAKTEAPAAKESSAASA-PMAKPAAV 1035
Query: 878 SAPATPLSTPTQQETVPTEVPQHLDANVQEEIAQPQETQQLAPQFAETTALVEEAPAEVV 937
AP + + E P E A+ + E P+ T + + T E +V
Sbjct: 1036 PAPTAKVKPAAKVEATPAEDKPEETASDEAEKPAPKATSRFGSMVSSTMTKPEVEARALV 1095
Query: 938 VADS----DATTRSEPAE 951
S +AT + AE
Sbjct: 1096 DTPSGRQYEATAKEASAE 1113