Pairwise Alignments
Query, 1049 a.a., ribonuclease E from Dickeya dianthicola 67-19
Subject, 1026 a.a., ribonuclease, Rne/Rng family (RefSeq) from Dinoroseobacter shibae DFL-12
Score = 386 bits (991), Expect = e-111
Identities = 261/741 (35%), Positives = 374/741 (50%), Gaps = 93/741 (12%)
Query: 71 KEIAREYFPSSYNAHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLM 130
+++A E R I++V++ Q ++VQV KEERGNKGAALTT++SLAG Y VLM
Sbjct: 339 EDVAEEIRRPRQRRERRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLM 398
Query: 131 PNNPRAGGISRRIEGD-DRTELKEALGSLELPDGMGLIVRTAGVGKSADALQWDLAFRLK 189
PN R GGISR+I DR +LKE +E+P G GLIVRTAG ++ ++ D + +
Sbjct: 399 PNTARGGGISRKITNAVDRKKLKEIASEIEVPRGAGLIVRTAGAKRTKTEIKRDYDYLKR 458
Query: 190 HWEAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILELAKEHIAALGR 249
WE I+ AP I++E N+I R+ RD DI E+L++ + +AK+ + L
Sbjct: 459 LWEQIRDLTLKSIAPAPIYEEGNLIKRSIRDLYSRDIDEVLVEGEEGYRVAKDFMKML-M 517
Query: 250 PDFGSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARA 309
P +KLY +PLF+ YQ+ES + F V+L SGG +VI TEAL AID+NS RA
Sbjct: 518 PSHAKNVKLYNENLPLFARYQVESYLAGMFNPTVQLKSGGYLVIGVTEALVAIDVNSGRA 577
Query: 310 TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQ 369
T+ G IEETA TNLEAA+E+ARQ+RLRDL GLIVIDFIDM R+ VE RL+D ++
Sbjct: 578 TKEGSIEETALKTNLEAAEEVARQVRLRDLAGLIVIDFIDMEERRNNTAVEKRLKDKLKT 637
Query: 370 DRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEE 429
DRARIQ+GRIS FGLLEMSRQRL P + E + C C GTG IR + SL+LSI+R +EE
Sbjct: 638 DRARIQVGRISGFGLLEMSRQRLRPGMLEITTQPCNHCHGTGLIRSDNSLALSIVRALEE 697
Query: 430 EALKENTKEVHAIVPVPIASYLLNEKREAVNAIEKRQGDVRAIIVPHDGMETPHYSVLRV 489
E ++ +EV PV + +YL NEKRE + IE R G +R+
Sbjct: 698 EGMRRRVREVLVKAPVNVINYLFNEKREHIALIEGRYG-----------------LSVRL 740
Query: 490 RKGEEKQTLSYMLPQLLDVESQPSLEEQTPERRVPEQPA-LASFTMSDIPPAETKPAPVV 548
E + + + +T R+V E A + S S + AE +V
Sbjct: 741 EASNELSGADFTIDKF-----------KTATRKVVELDAPVVSIDTSGVDEAE-----IV 784
Query: 549 TAPKAEKQPSSSERGLFGRFVGALKGIFAAPADVKEKPAET--VEATSDEQEQKQERRNN 606
P E+ + +E AET E TS+EQ ++ RR
Sbjct: 785 EEPDEEEADTETE-------------------------AETAATEETSEEQAPRKRRRRR 819
Query: 607 R--RQSGRRERPRDNREPRERDEQRRNKRTQPQNADVETAPVAEAPAQDKAVRDEQRREQ 664
R R+ G E N + + + + + Q AD+ + PA + + + ++
Sbjct: 820 RRSRRGGGTENGESNGDGSDEAQSAADADSSDQ-ADISEEAESSQPAVEAEAEEAPKPKR 878
Query: 665 RAERQRRRQEEKRQAQDD-------------------VKELNAVTEAADTEDAVAEQEKP 705
R R+R+ E+ +A D V E A AA+ E VAE E P
Sbjct: 879 RRRRRRKSDAEEGEAAPDGDAVSEDVSAPEPAPTPEPVAEAKADAPAAEAE-PVAEAEAP 937
Query: 706 AQVMQRR-------QRRQLTQKVRVQDSDATGENTEAQLPAAPYVQQSVVEVPEPAALAA 758
+ + + + V+ D + T+ + + S E +P A+
Sbjct: 938 VEPAESEAPAPEVDPTPETAETAPVEHGDEASDTTDEETGQPVSEEASEAEAEDPQAVEP 997
Query: 759 EVTNTENDAVESNRENGLPRR 779
E+ N+A + ++ P+R
Sbjct: 998 ELAEAANEAAPAQDDDTKPKR 1018
Score = 89.0 bits (219), Expect = 2e-21
Identities = 42/77 (54%), Positives = 53/77 (68%)
Query: 2 KRMLINATQQEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61
K+MLI+AT EE RV +VDG ++ + D ES Q NIY K+TR+EPSL+AAFVDYG
Sbjct: 3 KKMLIDATHAEETRVVVVDGTKVEEFDFESVNKRQLAGNIYLAKVTRVEPSLQAAFVDYG 62
Query: 62 AERHGFLPLKEIAREYF 78
RHGFL EI +Y+
Sbjct: 63 GNRHGFLAFSEIHPDYY 79
Score = 48.9 bits (115), Expect = 2e-09
Identities = 72/270 (26%), Positives = 108/270 (40%), Gaps = 59/270 (21%)
Query: 680 QDDVKELNAVTEA--ADTEDAVAEQEKPAQVMQRRQRRQLTQKVRVQDSDATGENTEAQL 737
+ D +E + TEA A TE+ EQ A +RR+RR+ + ++ ++ G+ ++
Sbjct: 786 EPDEEEADTETEAETAATEETSEEQ---APRKRRRRRRRSRRGGGTENGESNGDGSDEAQ 842
Query: 738 PAAPYVQQSVVEVPEPAALAAEVTNTENDAVESNRENGLPRRSRRSPRHLRVSGQRRRRY 797
AA ++ E A + AVE+ E P+ RR +RRRR
Sbjct: 843 SAADADSSDQADISEEA-------ESSQPAVEAEAEEA-PKPKRR---------RRRRRK 885
Query: 798 RDERYPAQSPMPMTQASASPEMASGKVWIRYPVAQQQQPERVEEPVSEF-IDAPLSAAPE 856
D + A+P+ + + P +P EPV+E DAP A E
Sbjct: 886 SDAE----------EGEAAPDGDAVSEDVSAP-----EPAPTPEPVAEAKADAP---AAE 927
Query: 857 LTAVAVATLPEAVDVLDTAPVSAPATPLS-TPTQQETVPTEVPQHLDANVQEEIAQP--- 912
VA A P ++ A APA + TP ET P E EE QP
Sbjct: 928 AEPVAEAEAP-----VEPAESEAPAPEVDPTPETAETAPVEHGDEASDTTDEETGQPVSE 982
Query: 913 -------QETQQLAPQFAETTALVEEAPAE 935
++ Q + P+ AE A E APA+
Sbjct: 983 EASEAEAEDPQAVEPELAE--AANEAAPAQ 1010
Score = 48.5 bits (114), Expect = 2e-09
Identities = 65/238 (27%), Positives = 84/238 (35%), Gaps = 29/238 (12%)
Query: 744 QQSVVEVPEPAALAAEVTNTENDAVESNRENGLPRRSRRSPRHLR-----VSGQRRRRYR 798
+ +VE P+ E T E A E E PR+ RR R R +G+
Sbjct: 780 EAEIVEEPDEEEADTE-TEAETAATEETSEEQAPRKRRRRRRRSRRGGGTENGESNGDGS 838
Query: 799 DERYPAQSPMPMTQASASPEMASGKVWIRYPVAQQQQPERVEEPVSEFIDAPLSAAPELT 858
DE A QA S E S + + + +P+R + AAP+
Sbjct: 839 DEAQSAADADSSDQADISEEAESSQPAVEAEAEEAPKPKRRRRRRRKSDAEEGEAAPDGD 898
Query: 859 AVAVATLPEAVDVLDTAPVSAPATPLSTPTQQETVPTEVPQHLDANVQEEIA--QPQETQ 916
AV+ VSAP P TP + P V E A +P E++
Sbjct: 899 AVS-------------EDVSAPE-PAPTPEPVAEAKADAPAAEAEPVAEAEAPVEPAESE 944
Query: 917 QLAPQFAETTALVEEAPAEVVVADSDATTR------SEPAETQPTEQPQVVHEPVLVE 968
AP+ T E AP E SD T SE A E PQ V EP L E
Sbjct: 945 APAPEVDPTPETAETAPVEHGDEASDTTDEETGQPVSEEASEAEAEDPQAV-EPELAE 1001
Score = 45.1 bits (105), Expect = 3e-08
Identities = 53/208 (25%), Positives = 81/208 (38%), Gaps = 18/208 (8%)
Query: 540 AETKPAPVVTAPKAEKQPSSSERGLFGRFVGALKGIFAAPADVKEKP------AETVEAT 593
A++ A TA A+ S + A++ AAP DV E A+T EA
Sbjct: 131 ADSNAAEAETAQDADAADSPDAKD-----APAVEAAQAAPEDVAEDAPTTETEAQTAEAE 185
Query: 594 SDEQEQKQERRNNRRQSGRRERPRDNREPRERDEQRRNKRTQPQNADVETAPVAEAPAQD 653
E + E E + E E + + +P + E AP +APA+D
Sbjct: 186 PAETAEADEDTAKPPMPHAVEGDDPTVKSEEVSEADADPQAEPGSPAAEEAPAEDAPAED 245
Query: 654 KAVRDEQRREQRAERQRRRQEEKRQAQD-DVKELNAVTEAADTEDAVAEQEKPAQVMQRR 712
K V + R+ ++ E +A+D + A D + AE+ K +RR
Sbjct: 246 KPVAEAAPRQTQSIPGMDVVETDSEAEDGPILVAEAAGAGPDGDKETAEKPK-----RRR 300
Query: 713 QRRQLTQKVRVQDSDATGENTEAQLPAA 740
RR+ V V + +AT E A AA
Sbjct: 301 SRRRKKTDVEVSE-EATDETAAADSDAA 327
Score = 39.7 bits (91), Expect = 1e-06
Identities = 40/152 (26%), Positives = 56/152 (36%), Gaps = 12/152 (7%)
Query: 873 DTAPVSAPATPLSTPTQQETVPTEVPQHLDANVQEEI-AQPQETQQLAPQFAETTALVEE 931
D A V+A + T Q+ + P DA E A P++ + AP E
Sbjct: 125 DAAEVTADSNAAEAETAQDADAADSPDAKDAPAVEAAQAAPEDVAEDAPTTETEAQTAEA 184
Query: 932 APAEVVVADSDATTRSEPAETQ---PTEQPQVVHE----PVLVENTPATQEPVAAVSAPA 984
PAE AD D P + PT + + V E P +PA +E A APA
Sbjct: 185 EPAETAEADEDTAKPPMPHAVEGDDPTVKSEEVSEADADPQAEPGSPAAEE-APAEDAPA 243
Query: 985 E---ISAVVPSQHYAAAPMTRAPAPAYVPDAP 1013
E ++ P Q + M + D P
Sbjct: 244 EDKPVAEAAPRQTQSIPGMDVVETDSEAEDGP 275
Score = 33.9 bits (76), Expect = 6e-05
Identities = 64/274 (23%), Positives = 96/274 (35%), Gaps = 28/274 (10%)
Query: 682 DVKELNAVTEAADTEDAVAEQEKPAQVMQRRQRRQLTQKVRVQDSDATGENTEAQLPAAP 741
D + L A A T DA ++ KP +RR RR+ +KV D DA E T A
Sbjct: 85 DREALLAEEMAFATADAEEDEVKP---KKRRSRRR--KKVETSDEDA-AEVTADSNAAEA 138
Query: 742 YVQQSVVEVPEPAALAAEVTNTENDAVESNRENGLPRRSRRSPRHLRVSGQRRRRYRDER 801
Q P A A A E E+ + + +
Sbjct: 139 ETAQDADAADSPDAKDAPAVEAAQAAPEDVAEDAPTTETEAQ----TAEAEPAETAEADE 194
Query: 802 YPAQSPMPMTQASASPEMASGKV--WIRYPVAQQQQPERVEEPVSEFIDAPLSAAPELTA 859
A+ PMP P + S +V P A+ P E P DAP P A
Sbjct: 195 DTAKPPMPHAVEGDDPTVKSEEVSEADADPQAEPGSPAAEEAPAE---DAPAEDKP--VA 249
Query: 860 VAVATLPEAVDVLDTAPVSAPATPLSTPTQQETVPTEVPQHLDA--NVQEEIAQPQETQQ 917
A +++ +D + T ++ E P V + A + +E A+ + ++
Sbjct: 250 EAAPRQTQSIPGMDV---------VETDSEAEDGPILVAEAAGAGPDGDKETAEKPKRRR 300
Query: 918 LAPQFAETTALVEEAPAEVVVADSDATTRSEPAE 951
+ + EEA E ADSDA + + E
Sbjct: 301 SRRRKKTDVEVSEEATDETAAADSDAADQDDGIE 334