Pairwise Alignments
Query, 1049 a.a., ribonuclease E from Dickeya dianthicola 67-19
Subject, 1098 a.a., RNAse E (RefSeq) from Shewanella sp. ANA-3
Score = 874 bits (2258), Expect = 0.0
Identities = 549/1079 (50%), Positives = 666/1079 (61%), Gaps = 122/1079 (11%)
Query: 1 MKRMLINATQQEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60
MKRMLINATQ EELRVALVDGQQLYDLDIESPGHEQKK+NIYKGKITR+EPSLEAAFVDY
Sbjct: 1 MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDY 60
Query: 61 GAERHGFLPLKEIAREYFPSSYNAHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI 120
GAERHGFLPLKEIAREYFP Y+ GRPNIK+V+ EGQEVIVQ+DKEERGNKGAALTTFI
Sbjct: 61 GAERHGFLPLKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFI 120
Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALGSLELPDGMGLIVRTAGVGKSADAL 180
SLAGSYLVLMPNNPRAGGISRRIEGD+RTELKEA+ LE+P GMGLIVRTAGVGK + L
Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMADLEVPAGMGLIVRTAGVGKESTEL 180
Query: 181 QWDLAFRLKHWEAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILELA 240
+WDL HW AI +AA+ + APFLIHQESNVIVRA RDYLR D+GEILID+P+I E A
Sbjct: 181 KWDLKVLQHHWAAITEAAQSKPAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEA 240
Query: 241 KEHIAALGRPDFGSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT 300
K+HI AL RPDF ++KLY E+PLF+H+QIESQIESAFQREVRLPSGGSIVID TEALT
Sbjct: 241 KQHI-ALVRPDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALT 299
Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE 360
+IDINSARAT+GGDIEETA NTNLEAADEIARQLRLRDLGGL+VIDFIDMTPVRHQREVE
Sbjct: 300 SIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVE 359
Query: 361 NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS 420
NRLRDAV DRAR+Q+GRISRFGL+EMSRQRL PSL ES+ H+CPRC G GTIR ESL+
Sbjct: 360 NRLRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLA 419
Query: 421 LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKREAVNAIEKRQGDVRAIIVPHDGME 480
LSILRL+EEEA+KENT ++ AIVPV +A++LLNEKR+A+ E+R DV ++P M
Sbjct: 420 LSILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRH-DVEVYVIPDPHMM 478
Query: 481 TPHYSVLRVRKGEEKQTLSYMLPQLLDVESQPSLEEQTPERRVPEQPALASFTMSDIPPA 540
TP Y V+R R +E SY + ++ E + ER PAL FT P
Sbjct: 479 TPDYRVIRHRTDDEIDESSY---KRIEQPEAKLYEPRKLERTAAPAPALKGFT----APQ 531
Query: 541 ETKPAPVVTAPKAEKQPSSSERGLFGRFVGALKGIFAAPADVKEKPA--ETVEATSDEQE 598
+ + A TA K E ++E G F + A+ F++ +KPA +T E + +
Sbjct: 532 KVEQAAAPTANKVE----ATEPGFFSKLFSAIGAFFSS----SDKPAAEKTTETKKSDSQ 583
Query: 599 QKQERRNNRRQSGRRERPRDN--------REPR-----------------ERDEQRRNKR 633
R NRR RR R + REPR R++ KR
Sbjct: 584 TANANRRNRRNDTRRTRNNQDADKAKEGTREPRTRNAKKSADAPQAQERPAREKDENAKR 643
Query: 634 TQPQNADVETAP-VAEAPAQDKAVRDEQRREQRAERQRRRQ----------EEKRQAQDD 682
T+P+ AP A +QD + E RE+R R RR+ E Q +
Sbjct: 644 TKPEPKSRNQAPKEVVAESQDDTPKQEVARERRQRRNMRRKVRIDNANETSEAPIQEEVI 703
Query: 683 VKELNAVTEAADTEDAVAEQEKPAQVMQRRQRRQLTQKVRVQDSDATGENTEAQLPAAPY 742
+ E+ AV AA+T+ A Q + RRQ R+ T V + ++AT ++A+
Sbjct: 704 LAEVAAV-NAANTDVATEPQSETKAPRSRRQPRKET-AVANETAEATDAVSQAEASTEVA 761
Query: 743 VQQSVVE--------VPEPAALAAEVTNTENDAVESNRENGL-------PRRSRRSPRHL 787
V+ VVE V E AE T+ +N V ++ ++ RRSRRSPRHL
Sbjct: 762 VEAPVVENRADAPSDVTESVKTEAE-TDADNADVSADADDKAKRESRDGQRRSRRSPRHL 820
Query: 788 RVSGQRRRRYRDERYPAQSPMPMTQASASPEMASGKVWIRYPVAQQQQPERVEEPVSEFI 847
R +GQRRRR DE+ A +P A P A G YP Q E E ++ I
Sbjct: 821 RAAGQRRRRDEDEQ-GASAP-----AQFVPNDALGDDQ-DYPAPSAQTAEAAETTEAKAI 873
Query: 848 DAPLSAAPELTAVAVATLPEAVDV-----------LDTAPVSAPATPLSTPTQQETVPTE 896
+ A E T + AT+ EA DV ++T + A AT + E T+
Sbjct: 874 E----VAAESTVTSPATVVEAADVSVVAETTASNAVETEVIEAVATEQVAEIKAEVATTK 929
Query: 897 VPQHLDANVQEEIAQPQETQQLAPQFAETTALVEEAPAEVVVADSDATTRSEPAETQPTE 956
P D V + +T+++A + +T EA E VVA PAET
Sbjct: 930 AP--ADTAVNNKAETSVKTKEVAVEPVKTV----EAVTEAVVA---------PAET--PA 972
Query: 957 QPQVVHEPVLVENTPATQEPVAAVSAPAEISAVVPSQHYAAAPMTRAPAPAYVPDAPRV 1015
QP+ + V VE + A A + A+APM + PAP P A V
Sbjct: 973 QPKAEAKAVAVEAVTPEADKAEAKEAMKSV---------ASAPMAK-PAPIVKPQAKPV 1021