Pairwise Alignments

Query, 1150 a.a., transcription-repair coupling factor from Dickeya dianthicola 67-19

Subject, 1148 a.a., transcription-repair coupling factor (mfd) from Pseudomonas stutzeri RCH2

 Score = 1262 bits (3265), Expect = 0.0
 Identities = 639/1138 (56%), Positives = 837/1138 (73%), Gaps = 7/1138 (0%)

Query: 10   LPGKAGEQRLLGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEIQQFT-AQPV 68
            LP  +G+Q   G L GAA ++  AE         +L+T D Q+A RL++E+  F    PV
Sbjct: 9    LPAASGKQHW-GNLPGAALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAFFAPGLPV 67

Query: 69   MTLPDWETLPYDSFSPHQEIISARLSTLYQLPSLTRGVLILPVNTLMQKVCPHAFLHGHA 128
            +  PDWETLPYD FSPHQ+I+S R+S LYQLP L+ GVL++P+ T + ++ P  FL G +
Sbjct: 68   LHFPDWETLPYDIFSPHQDIVSQRISALYQLPELSHGVLVVPITTALHRLAPKRFLLGSS 127

Query: 129  LMLKKGQRLSRDRLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEEPFRIDFFDD 188
            L+L  GQ+L  +++R +LE AGYR VD V EHGEFA RGAL+DLFPMGS  P+RID FDD
Sbjct: 128  LVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPLPYRIDLFDD 187

Query: 189  EIDSLRLFDADTQRTLNEVDQIHLLPAREFPTDKTAIELFRSQWREQFEVRRDAEHIYQQ 248
            EI++LR FD + QR++++V+ I LLPAREFP  K A+  FR+++RE+F+V      IYQ 
Sbjct: 188  EIETLRTFDPENQRSIDKVESIRLLPAREFPLKKEAVTGFRARFRERFDVDFRRCPIYQD 247

Query: 249  VSKGTLPAGIEYWQSLFFNQPLPALFSYLPTGTLLVNTGDIQQGADRFWQDIQQRHDSRR 308
            +S G  PAGIEY+  LF+ +    LF YLP  + + +   I+Q A++FW D++ R++ RR
Sbjct: 248  LSTGITPAGIEYYLPLFYEETA-TLFDYLPEDSQVFSLPGIEQAAEQFWSDVRNRYEERR 306

Query: 309  VDPMRPLPPPDALWLPVDTLFAELKQWPRVQLRSDTLPDKAANINLGYQPLPDLAVQHQN 368
            VDP RPL PP  L++PV+  FA LK WPRV      +           Q LP+LA++ + 
Sbjct: 307  VDPERPLLPPAELFMPVEDCFARLKLWPRVVASQQDVESGIGRERFNAQALPELAIESKA 366

Query: 369  KSPLDALRRFVEQFGGQVVFSVESEGRRETLQELLSRIKLSPAPVKSLEQ--AASPGCYL 426
              PL  LR+F+E + G+V+F+ ES GRRE L ELL+R+KL P  V       A+     +
Sbjct: 367  SEPLGKLRQFLESYPGRVLFTAESAGRREVLLELLARLKLRPQEVDGWTDFLASDQRLAI 426

Query: 427  MIGASEHGFIDTLRQRTLICESDLLGERVSRRRQDSRRTINTDTLIRNLAELRPGQPVVH 486
             I   + G    L    L+ ES L G+RV +RR+  +     + +I+NL ELR G PVVH
Sbjct: 427  TIAPLDEGL--QLDDVALVAESPLFGQRVMQRRRREKSRDGGENVIKNLTELREGSPVVH 484

Query: 487  LEHGVGRYAGLTTLEAGGIKAEYLILHYAGEDKLYVPVSSLHLISRYAGGAEESAPLHKL 546
            ++HGVGRY GLTTLE  G   E+L+L YA E KLYVPV+SLHLI+RY G  +  APLH+L
Sbjct: 485  IDHGVGRYQGLTTLEIEGQAQEFLLLQYAEEAKLYVPVASLHLIARYTGSDDALAPLHRL 544

Query: 547  GGDAWVRARQKAAEKVRDVAAELLDVYAQRAAHTGFAFKHDREQYQLFCQGFPFDTTPDQ 606
            G + W +A++KAAE+VRDVAAELLD+YA+RAA  G+AFK  +  Y+ F  GFPF+ TPDQ
Sbjct: 545  GSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPQVDYETFAAGFPFEETPDQ 604

Query: 607  AQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQH 666
              AI+AV  D+     MDRLVCGDVGFGKTEVAMRAAF+AV   +QV VLVPTTLLAQQH
Sbjct: 605  QAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVGVLVPTTLLAQQH 664

Query: 667  FDNFRDRFANWPVRIEMLSRFRSQKEQTQVLEQTQEGKVDILIGTHKLLQSDVYWRDLGL 726
            +++FRDRFA+WPVR+E++SRF+S KE    + +  EGK+DILIGTHKLLQ DV + +LGL
Sbjct: 665  YNSFRDRFADWPVRVEVMSRFKSAKEVQNAIAELAEGKIDILIGTHKLLQDDVKFSNLGL 724

Query: 727  LIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLA 786
            +I+DEEHRFGVR KE++KA+R+ VDILTLTATPIPRTLNM+++G+RDLSIIATPPARRL+
Sbjct: 725  VIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSIIATPPARRLS 784

Query: 787  VKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKAAQQLNELVPEARIAIGHGQM 846
            V+TFV E  + V++EA+LRE+LRGGQVYYL+NDV+ IEK A  L  LVPEAR+AIGHGQM
Sbjct: 785  VRTFVMEQQNTVIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQALVPEARVAIGHGQM 844

Query: 847  RERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGR 906
            RERDLE+VM+DF+H+RFNVLV +TIIETGID+PSANTIIIERAD FGLAQLHQLRGRVGR
Sbjct: 845  RERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGR 904

Query: 907  SHHQAYAYLLTPNPKAMSNDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEGQSG 966
            SHHQAYAYLLTP  KAM++DA KRLEAIA+ +DLGAGF LATHDLEIRGAGELLGEGQSG
Sbjct: 905  SHHQAYAYLLTPTRKAMTDDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGELLGEGQSG 964

Query: 967  QMESVGFSLYMDLLESAVESLKAGREPSLEDLISGQTDVELRLPALLPDDFIPDVNTRLS 1026
            Q+++VGF+LYM++LE AV++++ G +P+LE  + G  ++ LRLPAL+P+D++PDV+ RL 
Sbjct: 965  QIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEINLRLPALIPEDYLPDVHARLI 1024

Query: 1027 FYKRIASAKNDNELDDLKAELIDRFGKLPDAARHLLQVAGLRQQAQTLGIKRIEGNDKGG 1086
             YKRIA+A +++ L +L+ E+IDRFG LP+  ++L+++  L+ QA+ LGI +I+   +GG
Sbjct: 1025 LYKRIANAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKLGITKIDAGPQGG 1084

Query: 1087 FVEFSQHNRVDPTHLIGLLQRDPKIYRLDGPSRLKFIKDLGEYPQRLTFITTLLEEMA 1144
             +EFS    VDP  LI L+Q  PK Y+ +G +  KF   +    +R   +  LLE +A
Sbjct: 1085 RIEFSADTSVDPMVLIKLIQSQPKRYKFEGATLFKFQVPMERPEERFNTLEALLERLA 1142