Pairwise Alignments

Query, 1150 a.a., transcription-repair coupling factor from Dickeya dianthicola 67-19

Subject, 1171 a.a., transcription-repair coupling factor from Sinorhizobium meliloti 1021

 Score =  725 bits (1872), Expect = 0.0
 Identities = 436/1159 (37%), Positives = 658/1159 (56%), Gaps = 48/1159 (4%)

Query: 20   LGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEIQQFTAQ--PVMTLPDWETL 77
            +G +   A A+  AE+  R    V  I  D Q    L +++  F A   PV+TLP W+ L
Sbjct: 21   IGPVPTGAEALVLAELA-RAGAPVAYILSDGQKVADL-EQVLGFVAPDIPVLTLPGWDCL 78

Query: 78   PYDSFSPHQEIISARLSTLYQLPSLTR----GVLILPVNTLMQKVCPHAFLHGHALMLKK 133
            PYD  SP  +  + RL+ L  L +  R     ++++ +N  +Q++ P   +   A   + 
Sbjct: 79   PYDRVSPSADTSARRLAALSALIAHRRKPHPAIVLVTINAALQRISPQDVIESLAFTARP 138

Query: 134  GQRLSRDRLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEEPFRIDFFDDEIDSL 193
            G ++  D L  +LE+ G+  V  V E GEFA RG +LD++  GS EP R+DFF D ++++
Sbjct: 139  GNQIRMDDLAARLERNGFERVPTVREMGEFAVRGGILDVYVPGSGEPLRLDFFGDTLEAI 198

Query: 194  RLFDADTQRTLNEVDQIHLLPAREFPTDKTAIELFRSQWREQFEVRRDAEHIYQQVSKGT 253
            R FD  +QRT+ +V  + L P  E       I  FR Q+   F      + +YQ VS+G 
Sbjct: 199  RSFDPASQRTIGQVRSLDLNPMSEVSLTPETISHFRKQYLSLFGAATRDDALYQAVSEGR 258

Query: 254  LPAGIEYWQSLFFNQPLPALFSYLPTGTLLVNTGDIQQGADRFWQDIQQRHDSRRVD--- 310
              AG+E+W  LF+++ L  +F YL  G  +V     ++ A    + +   +D+R      
Sbjct: 259  RYAGMEHWLPLFYDR-LETVFDYLD-GFRIVTDHLAREAAAERSKLVLDYYDARLASASP 316

Query: 311  ---------PMRPLPPPDALWLPVDTLFAELKQWPRVQLRSDTLPDKAANINLGYQPLPD 361
                     P +P+PP D L+L        L     V+L   T  +  A   +  +    
Sbjct: 317  GKSQVTQGTPYKPVPP-DMLYLTAKGFGEALNDLNAVRLSPFTEHEGEARQVVNIEARQG 375

Query: 362  L-----AVQHQNKSPL-----DALRRFVEQF--GGQVVFSVESEGRRETLQELLSRIKLS 409
            L     A +  N          A++   E+   G +V+ S  +EG  + L ++L+   L+
Sbjct: 376  LRWAKPAGEADNDGTRTNVFDQAVKHIAEKRAKGAKVIVSGWTEGSLDRLLQVLAEHGLA 435

Query: 410  PA-PVKSLEQAAS--PG-CYLMIGASEHGFIDTLRQRTLICESDLLGERVSRRRQDSRRT 465
               PVK+L    S  PG     + + E GF        +I E D+LG+R+ RR +  +R 
Sbjct: 436  NIRPVKALSDIGSLKPGEAASAVLSLEAGF--ETGDLVVIGEQDILGDRLVRRSKRRKRG 493

Query: 466  INTDTLIRNLAELRPGQPVVHLEHGVGRYAGLTTLEAGGIKAEYLILHYAGEDKLYVPVS 525
             +    I  +  L  G  VVH EHG+GR+ GL T+EA G   + L L YA + KL++PV 
Sbjct: 494  AD---FIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLELVYADDAKLFLPVE 550

Query: 526  SLHLISRYAGGAEESAPLHKLGGDAWVRARQKAAEKVRDVAAELLDVYAQRAAHTGFAFK 585
            ++ L+SRY G     A L KLGG AW   + K  +++ D+A  L+ + A+R         
Sbjct: 551  NIELLSRY-GSEGTDAVLDKLGGVAWQARKAKLKKRLLDMAGGLIRIAAERHTRHAPVLA 609

Query: 586  HDREQYQLFCQGFPFDTTPDQAQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFL 645
                 Y  F   FP+D T DQ  +I+AV  D+ R   MDRLVCGDVGFGKTEVA+RAAF+
Sbjct: 610  AQDGVYDEFAARFPYDETEDQLNSIDAVRDDLGRGRPMDRLVCGDVGFGKTEVALRAAFI 669

Query: 646  AVENHKQVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSQKEQTQVLEQTQEGKV 705
            A  N  QVAV+VPTTLLA+QHF  F DRF   P+RI+  SR    K+     ++  EGK 
Sbjct: 670  AAMNGVQVAVVVPTTLLARQHFKTFSDRFRGLPIRIQQASRLVGSKDLALTKKEVAEGKT 729

Query: 706  DILIGTHKLLQSDVYWRDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN 765
            DI++GTH LL S + + +LGLLI+DEE  FGV+HKER+K ++ +V +LTL+ATPIPRTL 
Sbjct: 730  DIVVGTHALLGSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHVLTLSATPIPRTLQ 789

Query: 766  MAMSGIRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEK 825
            +A++G+R+LS+I TPP  R+AV+TF+  +D+LV+RE ++RE  RGGQ +Y+   V ++ +
Sbjct: 790  LALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQSFYVCPRVSDLPE 849

Query: 826  AAQQLNELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTII 885
                L   VPE ++A+ HGQM   +LE +MN F+  R++VL+ TTI+E+G+D+P+ANT+I
Sbjct: 850  IHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLI 909

Query: 886  IERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSNDAHKRLEAIASLEDLGAGFA 945
            + RAD FGLAQL+QLRGRVGRS  +A+A    P  K ++  A +RL+ + SL+ LGAGF 
Sbjct: 910  VHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLKVLQSLDTLGAGFQ 969

Query: 946  LATHDLEIRGAGELLGEGQSGQMESVGFSLYMDLLESAVESLKAGREPSLEDLISGQTDV 1005
            LA+HDL+IRGAG LLGE QSG ++ VGF LY  +LE AV  LK   E  + D       +
Sbjct: 970  LASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKG--EEEIHD-TGWSPQI 1026

Query: 1006 ELRLPALLPDDFIPDVNTRLSFYKRIASAKNDNELDDLKAELIDRFGKLPDAARHLLQVA 1065
             +  P ++P++++PD+N RL  Y+R+    +  E+D   AELIDRFG LP   +HLL++ 
Sbjct: 1027 SVGTPVMIPEEYVPDLNLRLGLYRRLGELTDLKEIDGFGAELIDRFGPLPTEVQHLLKIV 1086

Query: 1066 GLRQQAQTLGIKRIEGNDKGGFVEFSQHNRVDPTHLIGLLQRDPKIYRLDGPSRLKFIKD 1125
             ++   +T  +++++   KG  V+F      +P  L+G + +   + ++     + F ++
Sbjct: 1087 YVKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPAALVGYIAKQGTVAKIRPDQSIFFQRE 1146

Query: 1126 LGEYPQRLTFITTLLEEMA 1144
            L    +RL+    ++ ++A
Sbjct: 1147 LATPEKRLSGAAMVMTQLA 1165