Pairwise Alignments

Query, 1150 a.a., transcription-repair coupling factor from Dickeya dianthicola 67-19

Subject, 1177 a.a., Transcription-repair coupling factor (NCBI) from Rhodospirillum rubrum S1H

 Score =  740 bits (1910), Expect = 0.0
 Identities = 449/1143 (39%), Positives = 655/1143 (57%), Gaps = 56/1143 (4%)

Query: 43   VVLITPDMQNALRLRDEIQQF-TAQPVMTLPDWETLPYDSFSPHQEIISARLSTLYQL-- 99
            V+ +  D     RL + I  F  A  ++  P W+ +PYD  SP+ EI++ RL TL +L  
Sbjct: 40   VLHVARDDVRLARLAETIAFFHPAVEILEFPAWDCVPYDRVSPNVEIVARRLETLSRLSE 99

Query: 100  -PSLTRG--VLILPVNTLMQKVCPHAFLHGHALMLKKGQRLSRDRLRNQLEQAGYRSVDQ 156
             P+   G  +++   + ++Q+V P   L       + G RL   +L + L + GY   +Q
Sbjct: 100  EPTRQPGGRLVLTTASAILQRVPPRQILERGVFSARVGGRLDLGKLLDHLARHGYGRSEQ 159

Query: 157  VMEHGEFATRGALLDLFPMGSEEPFRIDFFDDEIDSLRLFDADTQRTLNEVDQIHLLPAR 216
            VME GE+A RG ++D+FP G+ EP R+D F DE+DSLR FD  +QRT  + D + L P  
Sbjct: 160  VMEPGEYAVRGGIVDIFPPGAPEPLRLDLFGDELDSLRSFDPVSQRTTGQRDALILRPMS 219

Query: 217  EFPTDKTAIELFRSQWREQFEVRRDAEHIYQQVSKGTLPAGIEYWQSLFFNQPLPALFSY 276
            E   DK +I  FRS +RE F     A+ +Y+ +S G    G+E+W  LF ++ +  LF+Y
Sbjct: 220  EVVLDKESISRFRSGYRELFGTPSAADALYEAISAGLPFMGMEHWLPLF-HEGMDTLFAY 278

Query: 277  LPTGTLLVNTGDIQQGADRFWQD-IQQRHDSRRVDPM-----------------RPLPPP 318
            +P G + ++ G    GA R  QD I +  ++RR+                      LPPP
Sbjct: 279  VPDGPVTLDPG--LDGALRSRQDQIFEYFEARRLMESVGDGAKASEKPGGGMIYHALPPP 336

Query: 319  DALWLPVDTLFAELKQWPRVQLRSDTLPDKAANINL--------GYQPLPDLAVQHQNKS 370
              ++L  D         P     +   PD A    +        G++   D+  +    +
Sbjct: 337  -RMFLEEDEFLRHCAGRPGAAFSAYAAPDVATEKGVVGDFLGRPGHE-FADIRAR-AGGN 393

Query: 371  PLDALRRFVEQF---GGQVVFSVESEGRRETLQELLSRIKLSPAPV-----KSLEQAASP 422
              DALR   +     G +VV +  + G RE +  +L    LSP        ++LE+A   
Sbjct: 394  VFDALRDHAQALRAAGKRVVLTAATMGARERMTGVLREHGLSPIVTAETWAEALERAKKA 453

Query: 423  GCYLMIGASEHGFIDTLRQRTLICESDLLGERVSRRRQDSRRTINTDTLIRNLAELRPGQ 482
               L +   + GF        +I E+D+LG+R+SR     R+    D  I +++ L  G 
Sbjct: 454  TVVLTL-ILDRGF--ETPDLAVISEADVLGDRLSR---PVRKKKLGDKFIPDISALSEGD 507

Query: 483  PVVHLEHGVGRYAGLTTLEAGGIKAEYLILHYAGEDKLYVPVSSLHLISRYAGGAEESAP 542
             VVH++HG+G+Y GL TL AGG   + L + YA  ++LYVPV ++ ++SRY G  +    
Sbjct: 508  LVVHVDHGIGQYEGLETLTAGGAPHDCLRVVYADNNRLYVPVENIEVLSRY-GSEQAGVQ 566

Query: 543  LHKLGGDAWVRARQKAAEKVRDVAAELLDVYAQRAAHTGFAFKHDREQYQLFCQGFPFDT 602
            L KLGG AW   + K  +++RD+A +L+ V A R    G         Y  F   FP+  
Sbjct: 567  LDKLGGVAWQARKAKLKQRIRDMAEQLIGVAAARQLKVGEVISPPEGLYDEFAARFPYAE 626

Query: 603  TPDQAQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLL 662
            T DQ +AI   L D+     MDRL+CGDVGFGKTEVA+RAAF    + +QVAV+VPTTLL
Sbjct: 627  TDDQLRAIADTLDDLAAGRPMDRLICGDVGFGKTEVALRAAFATAMSGRQVAVVVPTTLL 686

Query: 663  AQQHFDNFRDRFANWPVRIEMLSRFRSQKEQTQVLEQTQEGKVDILIGTHKLLQSDVYWR 722
            A+QH   F++RFA  PVRI  LSR  + ++   V E+   G +DI++GTH LL   V +R
Sbjct: 687  ARQHHLTFKERFAGLPVRIGQLSRLVTARDTKAVKEEMAAGTLDIVVGTHALLAKTVRFR 746

Query: 723  DLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGIRDLSIIATPPA 782
            DLGLLIVDEE  FGV HKER+K MRA+V +LTLTATPIPRTL +A++G+R++SIIATPP 
Sbjct: 747  DLGLLIVDEEQHFGVAHKERLKQMRADVHVLTLTATPIPRTLQLALTGVREMSIIATPPV 806

Query: 783  RRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKAAQQLNELVPEARIAIG 842
             RLAV+TFV  +D +VVREAILRE  RGGQ +Y+   + +I+K  ++L  LVP+ R  + 
Sbjct: 807  DRLAVRTFVLPFDPVVVREAILRERFRGGQCFYVCPRLTDIDKVMERLTTLVPDIRAVVA 866

Query: 843  HGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRG 902
            HGQM    LE VM  F   +++VLV T I+E+G+DIP ANTIII RAD FGLAQL+QLRG
Sbjct: 867  HGQMAPSRLEEVMTAFADGQYDVLVATNIVESGLDIPRANTIIIHRADMFGLAQLYQLRG 926

Query: 903  RVGRSHHQAYAYLLTPNPKAMSNDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE 962
            RVGR+  + YAYL  P  + +S  A KRL+ + +L+ LGAGF LA+HDL+IRGAG LLG+
Sbjct: 927  RVGRARARGYAYLTLPPGRTVSKTAAKRLDVMQTLDTLGAGFTLASHDLDIRGAGNLLGD 986

Query: 963  GQSGQMESVGFSLYMDLLESAVESLKAGREPSLEDLISG-QTDVELRLPALLPDDFIPDV 1021
             QSG ++ VG  LY  LLE AV + + G  P +E+        ++L  P L+PD ++ D+
Sbjct: 987  EQSGHIKEVGIELYQQLLEEAVAAAREG--PGVEEASGAWSPQIQLGTPILIPDSYVKDL 1044

Query: 1022 NTRLSFYKRIASAKNDNELDDLKAELIDRFGKLPDAARHLLQVAGLRQQAQTLGIKRIEG 1081
              RL  Y+RIA   ++ E+D++ AE++DRFG LPD   +LL+V  ++   +    ++++ 
Sbjct: 1045 GLRLGLYRRIAGVTDEAEIDEMAAEMVDRFGPLPDEVENLLKVVTIKVLCRRANAEKVDA 1104

Query: 1082 NDKGGFVEFSQHNRVDPTHLIGLLQRDPKIYRLDGPSRLKFIKDLGEYPQRLTFITTLLE 1141
              KG  + F  +   +P  L+  + ++    +L    +L + +D     +R+  +  L+ 
Sbjct: 1105 GPKGAVLSFRDNLFPNPGGLVRFIGQNVATVKLRPDHKLVYRRDWEVARERIQGLGKLMR 1164

Query: 1142 EMA 1144
             +A
Sbjct: 1165 TLA 1167