Pairwise Alignments

Query, 1150 a.a., transcription-repair coupling factor from Dickeya dianthicola 67-19

Subject, 1177 a.a., transcription-repair-coupling factor from Marinobacter adhaerens HP15

 Score = 1175 bits (3040), Expect = 0.0
 Identities = 609/1134 (53%), Positives = 797/1134 (70%), Gaps = 22/1134 (1%)

Query: 11   PGKAGEQRLLGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEIQQFTAQP--- 67
            P +  + R  GQL G++ A+   E    H GL ++IT    +A+RL   ++ F   P   
Sbjct: 20   PSRPADHRTWGQLHGSSEALAICESARAHKGLTLVITRSTADAIRLEQAMRFFLGLPPEE 79

Query: 68   -----------VMTLPDWETLPYDSFSPHQEIISARLSTLYQLPSLTRGVLILPVNTLMQ 116
                       +++LPDWETLPYD FSPHQ+IIS R+ TL++LP+ + GVL++P  TLM 
Sbjct: 80   DGPAVSDDGLELLSLPDWETLPYDLFSPHQDIISRRIRTLHRLPATSHGVLVVPARTLMH 139

Query: 117  KVCPHAFLHGHALMLKKGQRLSRDRLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMG 176
            ++ P  +L G+ L+L+ GQ L  +  R QLE AGYR  + V EHGE+A RGA+LD+FPMG
Sbjct: 140  RLPPVNYLQGNTLLLEVGQSLDIESWRMQLEAAGYRHAENVYEHGEYAVRGAILDIFPMG 199

Query: 177  SEEPFRIDFFDDEIDSLRLFDADTQRTLNEVDQIHLLPAREFPTDKTAIELFRSQWREQF 236
            + +PFRID FDDEI++LR FD +TQR+++ +++I LLPA EFP  K A   FRS+W EQF
Sbjct: 200  ASQPFRIDLFDDEIETLRTFDPETQRSIDRIERIELLPAFEFPWHKEARSGFRSRWFEQF 259

Query: 237  EVRRDAEHIYQQVSKGTLPAGIEYWQSLFFNQPLPALFSYLPTGTLLVNTGDIQQGADRF 296
                    IYQ V+ G  P GIEY+  LFF++    LF YLP  T +     +      F
Sbjct: 260  PDADKDTPIYQDVTHGITPPGIEYYLPLFFDETA-TLFDYLPGATHVFTADGLNDAVSHF 318

Query: 297  WQDIQQRHDSRRVDPMRPLPPPDALWLPVDTLFAELKQWPRVQLRSDTLPDKAANINLGY 356
              + + R++ RR D +RP+ PP  L+L  + LF +LK +PRV + ++T  D A ++N   
Sbjct: 319  DSETRNRYEDRRHDRLRPILPPKRLFLQQEELFGQLKAFPRVTVSAET-KDAAGSVNCPT 377

Query: 357  QPLPDLAVQHQNKSPLDALRRFVEQFGGQVVFSVESEGRRETLQELLSR----IKLSPAP 412
              LPD+A+  +   P   L+RF+ +F G V+   ES GRRE L E L      +K     
Sbjct: 378  TTLPDIAMDGRAADPAGRLKRFLGEFDGHVLICAESSGRREALMENLGEQGVELKTLSGW 437

Query: 413  VKSLEQAASPGCYLMIGASEHGFIDTLRQRTLICESDLLGERVSRRRQDSRRTINTDTLI 472
               L+   S    + I   E G +       LI E+ L GERV +RR+  + T   D   
Sbjct: 438  QAFLDDKES-SVAITIAPMEQGLVLPEHSVALITETALFGERVLQRRRREKPTETDDAGF 496

Query: 473  RNLAELRPGQPVVHLEHGVGRYAGLTTLEAGGIKAEYLILHYAGEDKLYVPVSSLHLISR 532
            R+L+ELR G PVVH++HGVGRY GL T+   G  +E+L+L YAG  KLYVPVSSLHLISR
Sbjct: 497  RDLSELRIGAPVVHIDHGVGRYLGLETITVEGEASEFLMLGYAGGSKLYVPVSSLHLISR 556

Query: 533  YAGGAEESAPLHKLGGDAWVRARQKAAEKVRDVAAELLDVYAQRAAHTGFAFKHDREQYQ 592
            YAG   E APLHKLG D W  A+QKA EK+RD AAELLDVYA+R A  GF+F+  +E Y+
Sbjct: 557  YAGNDTEHAPLHKLGTDRWSTAKQKALEKIRDTAAELLDVYARREARKGFSFEDPKEAYR 616

Query: 593  LFCQGFPFDTTPDQAQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQ 652
             F  GFPF+ TPDQ  AI +V  DM     MDRLVCGDVGFGKTEVAMRAAFLA  + KQ
Sbjct: 617  AFAAGFPFEETPDQQVAIQSVFEDMTSEQPMDRLVCGDVGFGKTEVAMRAAFLATWSGKQ 676

Query: 653  VAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSQKEQTQVLEQTQEGKVDILIGTH 712
            VAVLVPTTLLAQQH+++FRDRF++ PV++E+LSRFR+  + ++ LE  + G+ DI+IGTH
Sbjct: 677  VAVLVPTTLLAQQHYESFRDRFSDTPVQVELLSRFRTAGQTSKALEAVENGRADIVIGTH 736

Query: 713  KLLQSDVYWRDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGIR 772
            KLLQ D+ +++LGL+I+DEEHRFGV+ KER+KA+RA VD+L LTATPIPRTLNMAM  +R
Sbjct: 737  KLLQGDIKFKNLGLVIIDEEHRFGVQQKERLKALRAEVDMLNLTATPIPRTLNMAMGHLR 796

Query: 773  DLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKAAQQLNE 832
            DLSIIATPPARRL+VKTFVR+ D+ +V+EAILREILRGGQVY+L+NDV  IEK A+ L  
Sbjct: 797  DLSIIATPPARRLSVKTFVRQKDNAMVKEAILREILRGGQVYFLHNDVATIEKTAEDLRS 856

Query: 833  LVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHF 892
            L+PEAR+ + HGQMRERDLE++M+DF+H+RFNVLVCTTIIETGID+PSANTIIIERAD F
Sbjct: 857  LIPEARVGVAHGQMRERDLEKIMSDFYHKRFNVLVCTTIIETGIDVPSANTIIIERADKF 916

Query: 893  GLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSNDAHKRLEAIASLEDLGAGFALATHDLE 952
            GLAQLHQLRGRVGRSHHQAYAYLLTP PK+++ DA KRL+AI+  +DLGAGF LATHDLE
Sbjct: 917  GLAQLHQLRGRVGRSHHQAYAYLLTPPPKSITADAKKRLDAISEAQDLGAGFMLATHDLE 976

Query: 953  IRGAGELLGEGQSGQMESVGFSLYMDLLESAVESLKAGREPSLEDLISGQTDVELRLPAL 1012
            IRGAGELLGE QSGQ+ES+GF+LYM LL+ AV++++ GR P+ +  +S  T++ LR+PAL
Sbjct: 977  IRGAGELLGEEQSGQIESIGFTLYMQLLDEAVKAIREGRTPNADLPLSHGTEMNLRIPAL 1036

Query: 1013 LPDDFIPDVNTRLSFYKRIASAKNDNELDDLKAELIDRFGKLPDAARHLLQVAGLRQQAQ 1072
            +P+D++PDV+ RL  YKRIAS  +   L +L+ E+IDRFG LPD A++L++   LR +A+
Sbjct: 1037 IPEDYLPDVHNRLMLYKRIASVDSPEALKELQVEMIDRFGLLPDPAKNLIRQTELRLRAE 1096

Query: 1073 TLGIKRIEGNDKGGFVEFSQHNRVDPTHLIGLLQRDPKIYRLDGPSRLKF-IKD 1125
             LGI +++   +   +EF     VDP  L+  +Q  P  YRL+G +  +F +KD
Sbjct: 1097 ALGIVKVDAGKEWARLEFGSSTPVDPLVLVKKVQSAPDQYRLEGANSFRFRLKD 1150