Pairwise Alignments

Query, 482 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Dickeya dianthicola 67-19

Subject, 492 a.a., tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  185 bits (470), Expect = 3e-51
 Identities = 149/482 (30%), Positives = 220/482 (45%), Gaps = 26/482 (5%)

Query: 8   SLTPDFLTAMQAIMPAHLSMEAFIDACQRPLRRSIRVNTLKISVPDFLALV-APYGWELE 66
           +L   F+   +A++  +   E    A Q+    SIR+N L++      +L  +   +   
Sbjct: 2   NLPTSFIDYTRALL-GNEEYEKLAAALQQEPPVSIRINKLRMKEEGLSSLTDSSAHFSFN 60

Query: 67  AVPWCDEGFWLLNADEEAMRLGNALEHLAGLFYIQEASSMLPVSALLMGDASPARVLDMA 126
            VPW  +G++L   DE      + L H AG +Y+QEASSM     L     SP  +LD+ 
Sbjct: 61  KVPWASDGYYL---DERLTFTFDPLFH-AGCYYVQEASSMFVEQVLRQYVESPVVMLDLC 116

Query: 127 AAPGSKTTQIAARLNNQGLIVANEYSASRVKVLHANLHRCGVSNTALTHFDGRVFGNALP 186
           AAPG K+T   + L+   L+VANE   +R +VL  NL + G  +  +T+ D   F +ALP
Sbjct: 117 AAPGGKSTHARSVLSEGSLLVANEVIRNRSQVLAENLTKWGHPDVVVTNNDPADF-SALP 175

Query: 187 ETFDAILLDAPCSGEGVVRKDPAAMSHWSLESIADIAATQRELILSAFHALKPGGVLIYS 246
             FD IL D PCSGEG+ RKDP A+  WS E++      QR +I   +  LKPGG+LIYS
Sbjct: 176 SFFDVILTDVPCSGEGMFRKDPVAVEEWSPENVEICWQRQRRIIADIWPCLKPGGILIYS 235

Query: 247 TCTLNHQENQHVCRWLMQQFPAAC-------EVESLKDLFPQAHHALTEDGFLHVFPQIY 299
           TCT N +E++    W+ Q+F A         E     +L      +       H  P   
Sbjct: 236 TCTYNSKEDEENVCWIQQEFGAELLPLEVRNEWNITGNLLDGEDESQGSLSVCHFLPHKT 295

Query: 300 DSEGFFVARLRKTAAVPPLAAPNYKLGKLPFTPVSHKDAQLIRQSAQRLG--LQWSEQQ- 356
             EGFF+A LRK  +    AA ++   K          A     S + +G  L W +Q+ 
Sbjct: 296 KGEGFFLAALRKPDSEDEPAAYSFSKAKSSKKKDKKGGAAASPVSKEHMGMALNWLKQEN 355

Query: 357 ---LQLWQRDDEIWLFPA----ALQPMLGKMRFSRIGVKLAERFAKGYRWQHEAVVA--L 407
                L      I  FP      L  M   ++  + GV   E   +     H   ++  L
Sbjct: 356 VEKYTLSAEGAGIVAFPQRYTDELAAMKQHLKVIQAGVLTGEVKGRDLIPAHALAMSATL 415

Query: 408 GHPDSANTYALSAEQVVDWFRGKDIYPPSPVSHDEILLTWQQTTLGLTKRVGQRLKNTLP 467
              D+ +T  +S EQ + + R + I          ILLT++   LG  K +G R  N  P
Sbjct: 416 LRQDAFDTEEVSYEQAIAYLRKEAITLSETAPRGYILLTYRNIPLGFVKNIGNRANNLYP 475

Query: 468 RD 469
           ++
Sbjct: 476 QE 477