Pairwise Alignments

Query, 246 a.a., amino acid ABC transporter permease from Dickeya dianthicola 67-19

Subject, 596 a.a., amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  144 bits (364), Expect = 3e-39
 Identities = 87/237 (36%), Positives = 139/237 (58%), Gaps = 8/237 (3%)

Query: 5   WNWGI-FLQSAPFGNTTYLGW-IISGLQVTVSLSLCAWVIAFLLGSLLGILRTVPNRLLS 62
           + W I F ++  +G  T+LG  I+ GL VTV +SL +  +A  LG++LGI R      L 
Sbjct: 37  FQWDILFTRNTTYG--THLGLEILKGLGVTVRISLISSALALGLGTVLGIARLSLFAPLR 94

Query: 63  GIGTCYVELFRNVPLIVQFFSWYLVVPELLPANIGMWFKAELDPNIQFFLSSMFCLGMFT 122
              T  VE FRN PL+VQ F WY   P +LP NI    +     N +F+ +++  L ++T
Sbjct: 95  LTATAVVEFFRNTPLLVQLFFWYFAFPAILPENIR---ELLFTGNFEFWCATIG-LSVYT 150

Query: 123 AARVCEQVRAGIQSLPRGQKAAGLAIGLTLPQTYRYVLLPNAYRVVVPPLTSEMLNLVKN 182
           +A + E +RAG+QS+P+G   A  + GL   Q  R ++LP A+R ++PPL SE LN +KN
Sbjct: 151 SAFMAEVIRAGLQSIPKGLLEAAYSSGLNYVQVLRTIILPMAFRAIIPPLGSEFLNNMKN 210

Query: 183 SAIASTIGLVDMAAQAGKLLDYSAHAYESFSAITLAYIGINAIIMLIMQIVERKTRL 239
           S++A  +G+ ++  Q+ ++   +   +E+ SA T+ Y+ ++ +I  I+  V  K RL
Sbjct: 211 SSLAMVVGVAELTWQSQQVESLTFKGFEATSAATVLYLSLSLLISFILNGVNGKMRL 267



 Score = 98.6 bits (244), Expect = 3e-25
 Identities = 62/218 (28%), Positives = 109/218 (50%), Gaps = 24/218 (11%)

Query: 4   DWNWGIFLQSA--------PFGNTTYLGWIISGLQVTVSLSLCAWVIAFLLGSLLGILRT 55
           ++NWG+   +         P G +  L   + GL  ++ +++ A  ++F +G ++GI RT
Sbjct: 357 NFNWGVIADNLRTLLIWHFPNGQSDELFMGLGGLAYSLLMAVIAISVSFFIGLVVGIGRT 416

Query: 56  VPNRLLSGIGTCYVELFRNVPLIVQFFSWYLVVPELLPANIGMWFKAELDPNIQFFLSSM 115
             NR+       Y+EL R  PLI+  F  Y  +P L      +            F S+ 
Sbjct: 417 SDNRICRIPCLLYIELIRGNPLIIVIFWIYFFIPVLFNTFFNV------------FWSAT 464

Query: 116 FCLGMFTAARVCEQVRAGIQSLPRGQKAAGLAIGLTLPQTYRYVLLPNAYRVVVPPLTSE 175
             L +FT A + E VRAGIQ++P GQ  A  + GLT  QT R ++LP A + ++P +  +
Sbjct: 465 IALTLFTGAYLAEIVRAGIQNIPAGQVEAAYSTGLTFVQTMRRIILPQALKQMIPAIVGQ 524

Query: 176 MLNLVKNSAIASTIGLVDMAAQA----GKLLDYSAHAY 209
            + + K++++A  +G++++   A     +L+ Y    Y
Sbjct: 525 FIAIFKDTSLAFVLGVLELTFVAQGINNRLMVYPMEIY 562