Pairwise Alignments

Query, 601 a.a., long-chain fatty acid--CoA ligase from Dickeya dadantii 3937

Subject, 655 a.a., AMP-dependent synthetase and ligase (NCBI) from Rhodospirillum rubrum S1H

 Score =  183 bits (464), Expect = 2e-50
 Identities = 164/617 (26%), Positives = 267/617 (43%), Gaps = 31/617 (5%)

Query: 2   KTNSLPQYHLVHRIQ-------QQIAQRPDALAFREWAPEQEQQLDWHQVGERIRRIACG 54
           ++   P+Y  VHR+            + P  +A RE      +++ W + G  +R  A G
Sbjct: 5   RSRRAPEYADVHRLDTFPKVLADNAKRFPQDIALREKDLGIWKEVTWAEYGLMVRLYALG 64

Query: 55  LLGLGVDVQERVAIFSDNAINWSLADLALLHLRAITVPLYATSSAAQASFILNEADIRTV 114
           L  LGV+  + +A+   N   W   ++A   L   ++ +Y      +A ++L  +    V
Sbjct: 65  LKDLGVERGQVIALLGANRPEWLWGEIAAHALGCASLGIYKDVLDDEADYLLAHSGAVAV 124

Query: 115 FVGGQAQFDLLMSLRDSCPQLRTIILLDEQIRRRGCDIA-ISLQEFEEQAE-LSVWEPVL 172
               + Q D L++L    P LR I+  D +  R+  D   IS  + + +   L   +P L
Sbjct: 125 IAEDEEQVDKLLTLAARVPSLRHIVYCDPRGLRKYSDPRLISQDDLKARGRALDARDPGL 184

Query: 173 RQR-VADRDLSDLFTLIYTSGTTGEPKGVMLDYANVAIQLALHDERLQMSEQDVSLCFLP 231
            +R VA     D+  L  TSGTT  PK  ML           + E       D  +  LP
Sbjct: 185 YEREVAAGHGDDVAVLCTTSGTTARPKLAMLQAGAFLRHCLDYLEADPRHPGDDYVSVLP 244

Query: 232 LSHVFERIWSF--FIMHRGAQNVYLRDTNQVRDAMAAVSPTVMCAVPRFYEKVFSAIHEK 289
           L  + E++++    ++ RG  N    +   + D +  + P  +   PR +E + + +  +
Sbjct: 245 LPWIMEQVYAVGQALIARGIVNFVEEEATTMAD-LREIGPRFVLLAPRVWEGIAADVRAR 303

Query: 290 VAQAPWYRRTLFHWGIAQGNKRCLRRQAGKRAGVWNALTYR-LADRLVLSRLRQLLGGKV 348
           +  A  ++R +F  G+  G KR L R   +R+ +  AL +R L DRL  S L     G  
Sbjct: 304 MMDASPFKRAMFEIGMGLG-KRALARN--RRSWLAEALLFRALRDRLGFSFLTSAATG-- 358

Query: 349 RFLPAAGARLDDNIIAFFQAMGVRIIYGYGLTETCATVSCWEADHYRLGSVGTSLPGIDV 408
                 GA +     +FF AMGV +   YG TE         A      +VG       V
Sbjct: 359 ------GAAMGPETFSFFHAMGVPLKQLYGQTELAGAYVIHRAGDIDPETVGLPFAKSAV 412

Query: 409 RIGEQN-----EIQVRGAIVMRGYYRRPQETEDAFTPDGWFKTGDVGEMDA-NGNLFITE 462
           RI   +     EI  R   +  GY+     T      DGW  TGD G +   NG+L + +
Sbjct: 413 RIDNPDAEGVGEILGRDQGLFAGYFGAGDATAIDDLRDGWLHTGDAGFLKKENGHLVVID 472

Query: 463 RLKDLMKTSGGKYIAPQHLEGALGQDRFIEQVAVIADARKYVSALIVPCFEALEEYARSI 522
           R+KDL   S G   +PQ +E  L    FI +  ++   R Y++A+I   +  L ++A   
Sbjct: 473 RVKDLAVMSNGVRFSPQFIENKLKFSAFIAEAVILGRDRPYLAAIICIRWSILAKWAEQR 532

Query: 523 NLGYQDRLELLRHSHILSLFEQRLRDMQKEFARFEQVKKFTLLPAPFSQEEGELTPTLKL 582
            + +     L     + +L    +  +       ++V+KF LL      ++GELT T K+
Sbjct: 533 AISFTGYSSLAARPEVYALLRAEVERVNASLPAAQRVRKFLLLYKELDPDDGELTRTRKV 592

Query: 583 RRKVIHQRYQLEIEAMY 599
           RR V+ ++Y  EI A+Y
Sbjct: 593 RRGVVAEKYAKEITALY 609