Pairwise Alignments

Query, 425 a.a., ABC transporter substrate-binding protein from Dickeya dadantii 3937

Subject, 430 a.a., nitrate binding protein nrtA from Caulobacter crescentus NA1000

 Score =  292 bits (748), Expect = 1e-83
 Identities = 173/431 (40%), Positives = 246/431 (57%), Gaps = 21/431 (4%)

Query: 9   KTDNQTNVFSRRQFLVGSAALGGAM--LLPGIMNCAWAAGSDAPEKKEVRIGFIPLTDCA 66
           KTD  T+  +RR  L+G+AA   A     PG    A AAG+  PE  + R+GFI LTD +
Sbjct: 5   KTDKPTSGLTRRSALMGAAATLAAAKAAFPG---GAHAAGA-GPEVAKARLGFIALTDSS 60

Query: 67  SVVMASVKGFDKKYGIT-IVPSKEASWAAVRDKLVSGE----LDAAHVLYGLLYGLQAGA 121
            +++A  +G   KYG+  I   K+ASWAA RD LV G     +D AH+L  + Y +  G 
Sbjct: 61  PLIIAKERGLFAKYGMPDIEVVKQASWAATRDNLVLGAERGGIDGAHILTPMPYLMTTGT 120

Query: 122 --AGPQHNMAALMTLNNNGQAITLSNKL--CEAGVTDGASLKRFIAASPAGTYT-FAQTF 176
              G    M  L  LN NGQ I++ N L   + G+    +  +F+    AG     A TF
Sbjct: 121 ITGGAPTPMYILARLNTNGQGISVGNDLKSVKVGLNSAGAKAKFLQMKAAGNIAKVAMTF 180

Query: 177 PTGTHAMWLYYWLGAAGINPFDDVRTVVVPPPQMVVNMKIGNMSGFCVGEPWNQRAITDG 236
             GTH +W+ YWL A GINP  DV T+V+PPPQMV NMK G    FCVGEPWN + +   
Sbjct: 181 RGGTHDLWIRYWLAAGGINPDVDVSTIVIPPPQMVANMKAGTQDAFCVGEPWNGQLVNQK 240

Query: 237 LGFTAATSQDIWPDHPEKVLGTTAEWVNANPNTARALTAAVLDASRWIDSSDDNRRETAR 296
           +G+TA  + ++W +HPEK LG  A WV+  P  A+A+TAAV +A  W D +  N  +   
Sbjct: 241 VGYTACLTSELWMNHPEKALGMRASWVDRYPRAAQAITAAVQEAQMWCDKA-ANLPQMCS 299

Query: 297 VIAGRAYVNTQEETIAGRMLGQYDDGAGKRWQDA-HAMRFYHDGEVNFPYLSDGMWFLTQ 355
           +++GR YVN     I  R+ G  D G G+  +++ H M+F+ D   +FP+ S  +WFLT+
Sbjct: 300 IVSGRQYVNVPMGDILPRLQGTVDYGDGRTLKNSPHRMKFWAD-NASFPFKSHDLWFLTE 358

Query: 356 HKRWGLLAQEPDYQAVARQVNRIDIYKQAASAVGNVPLPSGEMRS-SVLIDGKRWDGSDP 414
             RWG+L Q+ + +A+  +VNR DI++ AA ++G    P+G+ R      DGK +D ++P
Sbjct: 359 DIRWGVLPQKTNTKALVDKVNRSDIWRAAAKSIGQSG-PAGDSRGVERFFDGKVFDPANP 417

Query: 415 AGYANSFSVKK 425
             Y  S  +KK
Sbjct: 418 GAYLASQPIKK 428