Pairwise Alignments

Query, 617 a.a., type VI secretion system tip protein VgrG from Dickeya dadantii 3937

Subject, 699 a.a., Rhs element Vgr protein from Pseudomonas stutzeri RCH2

 Score =  367 bits (943), Expect = e-106
 Identities = 227/627 (36%), Positives = 329/627 (52%), Gaps = 56/627 (8%)

Query: 21  FAVVDFELSEALNQPFALSLNLASSQPGIDFGAVLDQPCELLVWYEGELQRRVSGIVSRF 80
           F V++F+  EA++QP+   L L S +  +D  ++L +P  L +  +G     + G+V + 
Sbjct: 21  FKVLEFQGREAISQPYRFDLELVSERSDLDLESLLHRPAFLALAPDGS---GIHGLVHQA 77

Query: 81  AQGDTGFRRTRYQAEVRPALWRLGLRTNARIFQTQKPDAIISTLLEEAGITDYAFALRHD 140
           AQG++G R TRY+  + P L  L  RTN RIFQ      II+ +LEE GI   A+  +  
Sbjct: 78  AQGESGQRLTRYRLTLVPQLAYLAHRTNQRIFQHLTVPQIIAQVLEEHGIQADAYRFQLG 137

Query: 141 HAV---REYCVQYRESDLAFINRLAAEEGLFYFHEFEAGKHRVVFADDAGALAKGPELFF 197
             +   REYCVQY ESDL FI RL  EEG+ Y  +  A  H +VF DD     +     +
Sbjct: 138 PVIYPPREYCVQYDESDLHFIQRLCEEEGIHYHFQHSAAGHALVFGDDQTVFPRLAATAY 197

Query: 198 NLATQGLSEGAYVRRFRYAEAVSTAEVALKDYSFKTPAYGL---LHNKMSSELAHQRESY 254
              +  +++   ++RF       T+ V  +DY F+ P   +    H+    +L       
Sbjct: 198 QQDSGLVADQPVIKRFGLRLETRTSRVTRRDYDFEKPRLTMEASFHSDFQPDL------- 250

Query: 255 QHFDYPGRFKQDPSGKAFTGYRLDALRAGAMTGNGESNAAELRPGSSFTLTEHPNPAFNL 314
           + +DYPGRF +   GK  +   L+  R       GES+   L  G    L EHP   +N 
Sbjct: 251 EDYDYPGRFTERARGKHLSQRALERHRHDYELAEGESDQPRLASGHFLPLGEHPRSDWNQ 310

Query: 315 AWQVVAVAHSGQQPQALEEESGGEPTT-------LSNSFEVVKATTTWRAALPY-KPMVD 366
            W +  V H G+QPQ LEE       T         N F        +R AL + KP V 
Sbjct: 311 LWLLTEVLHEGKQPQVLEESVTSHVDTGDGFIQGYRNHFIATPWDIPFRPALKHPKPKVL 370

Query: 367 GPQIATVVGPAGEEIYCDEFGRVKLQFPWDRYGASDDQSSCWVRVSQGWAGGQYGLIAIP 426
           G Q A V GP GEEI+CDE+GRV++QF WDR G +DD++SCW+RVS  WAGG+YG IAIP
Sbjct: 371 GSQTAVVTGPVGEEIHCDEYGRVRVQFHWDREGQADDKTSCWLRVSSSWAGGRYGGIAIP 430

Query: 427 RIGHEVVVSFLEGDPDQPIVTGRTFHATNPSPYPLPASKTRTSLRT-STHKGAGFNELRF 485
           R+G EV+V+FLEGDPDQP+VTG  +H  +  PY LPA+KTRT  +T S+  G G+NELR 
Sbjct: 431 RVGMEVLVTFLEGDPDQPLVTGCLYHKDHQVPYDLPANKTRTVFKTLSSPGGGGYNELRI 490

Query: 486 EDQAGQEEVFIHAQKDMNTVVLNNRSTSVNASHTENVGGDQTVVVQHNQTVSVKENQVTE 545
           ED+ G E++++HAQ+D +                EN+  DQ + V H +  +V+ N  +E
Sbjct: 491 EDRKGAEQIYLHAQRDWD----------------ENIEHDQKIRVGHERHDTVEANSYSE 534

Query: 546 IQGEQTVAVTKNRHTTVDDNESLQVKKNIAIQSQSGDVLIA------TAGGFIAIDKDGN 599
            + E+      +R T +  N+ L V  +  ++  +G  + A       AG  + ID    
Sbjct: 535 FKAEEHRTTHADRKTEIRANDHLTVGNSQHLKIGTGQFIEAGNEIHYYAGSKVVIDAGME 594

Query: 600 ISITG---------KGLVLNGTRIDLN 617
           ++ +G          G+ L+G  I +N
Sbjct: 595 LTASGGGSFLKLDPSGVTLSGATIRMN 621