Pairwise Alignments

Query, 284 a.a., ABC transporter permease subunit from Dickeya dadantii 3937

Subject, 301 a.a., polyamine ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 73.6 bits (179), Expect = 5e-18
 Identities = 55/221 (24%), Positives = 110/221 (49%), Gaps = 6/221 (2%)

Query: 45  LSLRFWQTMLTDEQLWRSFFYSARIALVSALLSAALAYPLAIWL-RKPFPGAVTLRALLK 103
           L L  +  +L D   + ++  S ++ALVS +    + YP+A  + R P      L  L+ 
Sbjct: 65  LHLGNYLMLLDDPLYYTAYLSSLKMALVSTIGCLIIGYPMAYAIARAPARWQTVLLLLVM 124

Query: 104 APLLVPGLTAAFLFVNFISYQGFLNVAMLRLGLTERPIRMQNDANGIGVILLQVWKQMPF 163
            P     L   + ++  +S  G +N +++ LG+   P+++ N    I V +  ++  +PF
Sbjct: 125 LPSWTSFLIRVYAWMGILSNTGIINNSLMWLGIISEPLQILN--TNIAVYIGIIYAYLPF 182

Query: 164 ALLLLSGSVQAIGDTVLDAARNLGAGAWVRFRRIVLPLTLRALQTAMMLIFIGAAGDFSF 223
            +L L  ++  +  ++++AA +LG+     F +I  PL+   +    ML+FI A G+F  
Sbjct: 183 MILPLYATLVKLDMSLIEAASDLGSSRINTFWKITFPLSKSGVIAGSMLVFIPAVGEFVI 242

Query: 224 -QSVAGPVNLNSMSQLMLRVQQSGAEGWNQAAVVAVMLMLL 263
            + + GP +L  M   +L  +      W  A+ +A+++++L
Sbjct: 243 PELLGGPDSL--MIGKVLWQEFFNNRDWPVASSLAIVMLVL 281