Pairwise Alignments

Query, 285 a.a., deoxyribonuclease IV from Dickeya dadantii 3937

Subject, 277 a.a., endonuclease IV (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  353 bits (907), Expect = e-102
 Identities = 172/277 (62%), Positives = 207/277 (74%), Gaps = 2/277 (0%)

Query: 1   MKYVGAHVSASGGVDQAVARAHDIGATAFALFTKNQRQWQAPPLAADVIDRFQAACAQYQ 60
           MKY+GAHVSASGGV+ A   AH+IGA AFALFTKNQRQW + PL  + I  F+  C +Y 
Sbjct: 1   MKYIGAHVSASGGVEFAPVNAHEIGANAFALFTKNQRQWVSKPLKEENIRLFKENCTKYN 60

Query: 61  FAPAQILPHDSYLINLGHPDDDALQKSQAAFIDEMSRCQQLGLTLLNFHPGSHLRQIDES 120
           F    ILPHDSYLINLGHP+++ L+KS+AAF+DEM RC+QLGL LLNFHPGSHL +I   
Sbjct: 61  FQTDYILPHDSYLINLGHPEEEGLEKSRAAFLDEMQRCEQLGLKLLNFHPGSHLNKISIE 120

Query: 121 TCLSRIAQSINLALDATAGVTAVIENTAGQGSNLGFRFEHLAEIIDQVEDKSRVGVCIDT 180
            CL+ IA+SINL L+ T GVTAVIENTAGQGSNLG  F  L  IID+V DKSRVG+C+DT
Sbjct: 121 DCLALIAESINLTLEKTKGVTAVIENTAGQGSNLGSEFWQLRYIIDRVNDKSRVGICLDT 180

Query: 181 CHAFAGGYDLRTEADCEHTFAELERIVGFRYLRGMHLNDAKSEFNSRVDRHHSLGEGNIG 240
           CH +  GYD+    D +  F E E+ VGF YLRGMHLND+K E  S VDRH ++G+G IG
Sbjct: 181 CHTYTAGYDIVN--DYDKVFDEFEKEVGFEYLRGMHLNDSKKELGSHVDRHDNIGQGLIG 238

Query: 241 KTVFSYIMRDPRFDGIPLILETINPDIWAQEIAWLKS 277
              F  +M+D RFD +PLILET +   WA+EIAWL+S
Sbjct: 239 SAFFERLMKDSRFDNMPLILETPDESKWAEEIAWLRS 275