Pairwise Alignments

Query, 379 a.a., cytochrome d ubiquinol oxidase subunit II from Dickeya dadantii 3937

Subject, 346 a.a., Probable integral membrane cytochrome D ubiquinol oxidase (subunit II) CydB (cytochrome BD-I oxidase subunit II) from Mycobacterium tuberculosis H37Rv

 Score =  201 bits (510), Expect = 3e-56
 Identities = 118/373 (31%), Positives = 196/373 (52%), Gaps = 46/373 (12%)

Query: 6   VLRFVWWLLIGVLLIGFAVTDGFDMGVGVLVRL-----MGRNDVERRVMINSIAPHWDGN 60
           VL+ +W+ +I  L +GF + +GFD GVG+L+       MG  +  RR  +N+I P WDGN
Sbjct: 2   VLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGN 61

Query: 61  QVWLITAGGALFAAWPMVYAAAFSGFYIAMILVLASLYFRPVGFDYRSKIEDPRWRNMWD 120
           +VWLITAG A+FAA+P  YA  FS  Y+ ++ +L  +  R V  ++R KI+DP+WR   D
Sbjct: 62  EVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGAD 121

Query: 121 WGIFIGSFVPPVVIGVAFGNLLQGVPFHVDEYLRLYYTGNFFQLLNPFGLLAGVVSLSMI 180
           +GI  GS++P ++ GVAF  L++G+P   + ++ L    +   +LN + LL G+ +  + 
Sbjct: 122 FGIAAGSWLPALLWGVAFAILVRGLPVDANGHVAL----SIPDVLNAYTLLGGLATAGLF 177

Query: 181 VAQGSTYLVMRTSGDLHFRAKKVAQFSSLALTVTFALAGVW--VVYGIDGYAVTSVMNTA 238
              G+ ++ ++TSG +   A + A + SL +    A  G+W  + YG D           
Sbjct: 178 SLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKD----------- 226

Query: 239 AESNPLHKEVARQAGAWLVNFNNHPVLWAVPLLGVVLPLMTAVMARAEKGAMAFLFSSLS 298
                           WLV          + + G      T ++ R      AF+ + + 
Sbjct: 227 --------------WTWLV----------LAVAGCAQAAATVLVWRRVSDGWAFMCTLIV 262

Query: 299 IACVILTAGIAMFPFIMPSVTVPNVSLTVWDATSSLLTLRVMTVVAIIFVPIVLSYTIWC 358
           +A V++    A++P ++PS   P  SLT+ +A+S+  TL++MT V   F P+ ++Y  W 
Sbjct: 263 VAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLKIMTWVTAFFAPLTVAYQTWT 322

Query: 359 YYKMFGRITKEHV 371
           Y+    RI+ E +
Sbjct: 323 YWVFRQRISAERI 335