Pairwise Alignments

Query, 576 a.a., single-stranded-DNA-specific exonuclease RecJ from Dickeya dadantii 3937

Subject, 570 a.a., single-stranded-DNA-specific exonuclease RecJ from Rhodanobacter denitrificans FW104-10B01

 Score =  528 bits (1359), Expect = e-154
 Identities = 291/577 (50%), Positives = 383/577 (66%), Gaps = 15/577 (2%)

Query: 4   VTQLRRRPT--AETELPDSLPALLRRLYAQRGVRQMQELERSLRGLLDYRLLGGITQAVE 61
           V QLRRR    A     D++  +L+++YA RGV +  ++E  L  +L  +LLGG+  AV+
Sbjct: 3   VLQLRRREGRGAPHGWADAVHPVLQQIYAARGVLEPGQVEHRLARMLSPQLLGGMAPAVD 62

Query: 62  VLRQALADNRRIVIVGDFDADGATSTALTVLALRSMGGREVQYLVPNRFEDGYGLSPEVV 121
           +L +A+ D+  I+I GD+D DGAT  A+ V  LR +G R V Y +PNRF  GYGLSP  V
Sbjct: 63  LLVEAIRDDWTILIAGDYDCDGATGAAVAVRGLRLLGARRVDYAIPNRFAHGYGLSPAFV 122

Query: 122 AQAAAKGAELIVTVDNGISSHAGVDDAHRRGIAVVVTDHHLPGETLPAAEAMINPNLSDC 181
           A       +LIVTVDNG++S AGV  A  RGI V+VTDHHLPGE LPA +AM+NPNL   
Sbjct: 123 ASLQPT-PQLIVTVDNGVASVAGVAAAKARGIRVIVTDHHLPGEQLPACDAMVNPNLPGD 181

Query: 182 AFPSKALAGVGVAFYLMMALRANLRECGWFAERGLAEPNLAELLDLVALGTVADVVPLDA 241
            FPSKALAGVGV FYL++ALR  +RE G FA    AEP+L+ LLDLVALGTVAD+VPLD 
Sbjct: 182 GFPSKALAGVGVVFYLLLALRGRMRERGVFAG---AEPDLSGLLDLVALGTVADLVPLDF 238

Query: 242 NNRILISQGLSRIRAGKCRPGIRALLEVSNRDAAQLVASDLGFALGPRLNAAGRLDDMSV 301
           NNR+L+  GL R+R+G+   GI AL+E   R  A L ++DL FA+GPRLNAAGRL+DM +
Sbjct: 239 NNRVLVEAGLQRMRSGRGCAGIAALVEAGKRSLATLCSTDLAFAVGPRLNAAGRLEDMRL 298

Query: 302 GVELLLCNDIVQARMLASDLDALNQSRREIEAGMQVEALHLCEQLERSRDTLPLGLAMYH 361
           GVE LL +D+ QAR  A  LDA+N+ RRE++A M  EA  +   L        +G+A++ 
Sbjct: 299 GVECLLTDDVAQARRHAEQLDAINRERRELQASMVAEAEVMVAGLGH---VDAVGVALFE 355

Query: 362 PQWHQGVVGILASRIKERFHRPVIAFAPAGDG---ILKGSGRSIAGLHLRDALERLDTCH 418
           P WH GVVG++AS++KER HRPVIAFAPAG+     L+GS RSI G H+RDAL  +D   
Sbjct: 356 PSWHAGVVGLVASKLKERLHRPVIAFAPAGEDDTENLRGSARSIPGFHIRDALAAIDARQ 415

Query: 419 PGLMLKFGGHAMAAGLSLVEDRFDEFRQRFADLVGEWLDASQLEGVVWSDGELASPELTL 478
           PGL+ +FGGHAMAAGLSL    +  F   F  +  E ++  +L+ V+++DGEL     TL
Sbjct: 416 PGLIERFGGHAMAAGLSLRSADYPRFAAAFDAIARELIEPERLQAVLYTDGELPPGAATL 475

Query: 479 GTAEMLREAGPWGQAFPEPTFDGRFRLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDT 538
           G A  LR AGPWGQAFPEP FD  F     +L+GE HL++ +     G L D + FN   
Sbjct: 476 GLARQLRAAGPWGQAFPEPLFDNLFDCAGWKLMGESHLRLQLRDPRDGALHDAVMFNAYH 535

Query: 539 LLWPDSSVREVELAYKLDVNEFRGKRSVQLLIEHLWP 575
              P S +R V   Y+L +N+++G+ + +LL+ H+ P
Sbjct: 536 GQPPPSRLRAV---YELTINDWQGRETPRLLLRHIEP 569