Pairwise Alignments

Query, 576 a.a., single-stranded-DNA-specific exonuclease RecJ from Dickeya dadantii 3937

Subject, 569 a.a., Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) from Pseudomonas fluorescens FW300-N1B4

 Score =  622 bits (1604), Expect = 0.0
 Identities = 323/565 (57%), Positives = 409/565 (72%), Gaps = 10/565 (1%)

Query: 17  LPDSLP------ALLRRLYAQRGVRQMQELERSLRGLLDYRLLGGITQAVEVLRQALADN 70
           LPD+LP       LL RLYA RGV+   EL++SL  L+ Y+ L GI  AV++L  AL   
Sbjct: 8   LPDTLPFLGDIPPLLTRLYAARGVQSEAELDKSLARLIPYQQLKGIDAAVDLLVTALEQR 67

Query: 71  RRIVIVGDFDADGATSTALTVLALRSMGGREVQYLVPNRFEDGYGLSPEVVAQAAAKGAE 130
           +RI+IVGDFDADGAT++ + +L LR +G   V YLVPNRFE GYGL+PE+V  A  +   
Sbjct: 68  QRILIVGDFDADGATASTVGMLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALTREPH 127

Query: 131 LIVTVDNGISSHAGVDDAHRRGIAVVVTDHHLPGETLPAAEAMINPNLSDCAFPSKALAG 190
           L++TVDNGISS  GV  A + G+ V+VTDHHLPG+ LP A+A++NPN   C FPSKALAG
Sbjct: 128 LLITVDNGISSVEGVAAAKKAGLKVLVTDHHLPGDELPLADAIVNPNQPGCEFPSKALAG 187

Query: 191 VGVAFYLMMALRANLRECGWFAERGLAEPNLAELLDLVALGTVADVVPLDANNRILISQG 250
           VGV FY++MALRA LR  GW+  +   +PN+ ELLDLVALG+VADVVPLDANNRIL+ QG
Sbjct: 188 VGVIFYVLMALRARLRSLGWYESK--PQPNIGELLDLVALGSVADVVPLDANNRILVHQG 245

Query: 251 LSRIRAGKCRPGIRALLEVSNRDAAQLVASDLGFALGPRLNAAGRLDDMSVGVELLLCND 310
           L RIRAG+ R GI+A+LEV+ RD +++ ++DLGF LGPRLNAAGRLDDMS+G+E LL  D
Sbjct: 246 LERIRAGRARAGIKAILEVAKRDHSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLTED 305

Query: 311 IVQARMLASDLDALNQSRREIEAGMQVEALHLCEQLERSRDTLPLGLAMYHPQWHQGVVG 370
              AR +A+ LD +NQ R+ IE GMQ EAL   + L    +++P GL ++ P+WHQGV+G
Sbjct: 306 AGAAREMAAQLDGMNQDRKSIEQGMQREALAQLKDLPV--ESMPFGLCLFDPEWHQGVIG 363

Query: 371 ILASRIKERFHRPVIAFAPAGDGILKGSGRSIAGLHLRDALERLDTCHPGLMLKFGGHAM 430
           ILASR+KER+ RP IAFA AGDG+LKGSGRS+ G H+RDAL  +   HP L+ K+GGHAM
Sbjct: 364 ILASRMKERYFRPTIAFADAGDGLLKGSGRSVQGFHIRDALSVVAAQHPNLISKYGGHAM 423

Query: 431 AAGLSLVEDRFDEFRQRFADLVGEWLDASQLEGVVWSDGELASPELTLGTAEMLREAGPW 490
           AAGL+L E  F  F + F   V   L    L G + SDG LA  E  L  A  LR AGPW
Sbjct: 424 AAGLTLPEANFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPW 483

Query: 491 GQAFPEPTFDGRFRLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTLLWPDSSVREVE 550
           GQ FPEP F G F+L++QR+VGERHLKV+++   G   LDGIAF +D  +WP+ +++ VE
Sbjct: 484 GQHFPEPLFHGVFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGIDRDIWPNPTIKWVE 543

Query: 551 LAYKLDVNEFRGKRSVQLLIEHLWP 575
           LAYKLD+NEFRG  +VQL+I H+ P
Sbjct: 544 LAYKLDLNEFRGNETVQLMIAHIEP 568