Pairwise Alignments

Query, 576 a.a., single-stranded-DNA-specific exonuclease RecJ from Dickeya dadantii 3937

Subject, 571 a.a., single-stranded-DNA-specific exonuclease RecJ (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  272 bits (695), Expect = 3e-77
 Identities = 211/562 (37%), Positives = 292/562 (51%), Gaps = 39/562 (6%)

Query: 24  LLRRLYAQRGVRQMQE----LERSLRGLLDYRLLGGITQAVEVLRQALADNRRIVIVGDF 79
           L+ RL  +RGV  + +    L  +LR L       G+ QA   L   L       + GD+
Sbjct: 30  LIVRLLWRRGVGSVDDMALYLSPNLRHLAPLAEWPGLEQAASTLADGLLAGLPFAVWGDY 89

Query: 80  DADGATSTALTVLALRSMGGREVQYLVPNRFEDGYGLSPEVVAQAAAKGAELIVTVDNGI 139
           D DG TSTAL V  + +  G    + +P+R E+GYGL+   V + A +G  L++TVD GI
Sbjct: 90  DVDGVTSTAL-VKGVLAQHGMAAAHHIPDRREEGYGLNVAWVERLAEQGVRLLLTVDCGI 148

Query: 140 SSHAGVDDAHRRGIAVVVTDHHLPGETLPAAEAMINPNLSDCAFPSKALAGVGVAFYLMM 199
           S    V  A   G+ VVV+DHH+P E LP A A+ NP L++C  P  ALAGVGV+F +M 
Sbjct: 149 SDVEPVRRARELGMTVVVSDHHMPPEGLPDANAICNPRLAEC--PCPALAGVGVSFLVMA 206

Query: 200 ALRANLRECGWFAERGLAEPNLAELLDLVALGTVADVVPLDANNRILISQGLSRIRAGKC 259
           A+ A L      AER   + ++ + LDLVALGT+ADVV L   NRIL+  GL +I   + 
Sbjct: 207 AVNAAL------AERTGKKADMRDFLDLVALGTLADVVNLHGQNRILVKNGLLKIAEAR- 259

Query: 260 RPGIRALLEVSN-RDAAQLVASDLGFALGPRLNAAGRLDDMSVGVELLLCNDIVQARMLA 318
           RPG+ AL  VS     A + A  + F L PR+NAAGR+    + ++LLL +D  +A  LA
Sbjct: 260 RPGMAALKTVSGYNPTAAIGAGQVVFGLAPRINAAGRMGKAELALQLLLTDDHAEAARLA 319

Query: 319 SDLDALNQSRREIEAGMQVEALHLCE-QLERSRDTLPLGLAMYHPQWHQGVVGILASRIK 377
            +LDA N  RR  E  +   A    E QL+R      +GL ++   WH GV+GI+ASRI 
Sbjct: 320 QELDAENARRRAEEDRILDAAKKQAEGQLDR------MGLVLHGDDWHPGVIGIVASRIV 373

Query: 378 ERFHRPVIAFAPAGDGILKGSGRSIAGLHLRDALERLDTCHPGLMLKFGGHAMAAGLSLV 437
           + F+RP +  +  G   +KGSGRS+A   L   L R       L   FGGH  AAG+S+ 
Sbjct: 374 DEFYRPTLILSSDGQS-MKGSGRSVAEFDLHAGLTRC----ADLFTAFGGHHQAAGMSMP 428

Query: 438 EDRFDEFRQRFADLVGEWLDASQLEGVVWSDGE----LASPELTLGTAEMLREAGPWGQA 493
               D  R+RF  +V   L  + L   +  DGE    LA     L   EML+   P+G  
Sbjct: 429 ASHVDTLRERFDAVVRAELGDTPLTPRLKLDGELGFALAGDFTLLKELEMLQ---PFGTG 485

Query: 494 FPEPTFDGRFRLLQQ-RLVG--ERHLKVMVEPLGGGPLLDGIAFNVDTLLWPDS-SVREV 549
             EP F     L++  R  G    H+++ +     G  L   A+   +  +PDS     V
Sbjct: 486 NAEPVFASPPVLVRDLRRFGPTRDHVELQLTDESCGITLRAKAWR-QSGQFPDSLRGTRV 544

Query: 550 ELAYKLDVNEFRGKRSVQLLIE 571
            LAY   ++ + G  SV L I+
Sbjct: 545 RLAYTPRIDRYNGAASVDLRIK 566